Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G01500 273 / 2e-91 Erythronate-4-phosphate dehydrogenase family protein (.1) AT1G19400 174 / 5e-53 Erythronate-4-phosphate dehydrogenase family protein (.1.2) AT1G75180 147 / 1e-42 Erythronate-4-phosphate dehydrogenase family protein (.1.2.3) AT5G04790 0 / 1 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007912 [exp] 422 / 3e-150 AT1G01500 350 / 1e-120 Erythronate-4-phosphate dehydrogenase family protein (.1) Lus10005124 [exp] 358 / 2e-125 AT1G01500 360 / 3e-125 Erythronate-4-phosphate dehydrogenase family protein (.1) Lus10018819 [exp] 256 / 1e-84 AT1G01500 303 / 3e-102 Erythronate-4-phosphate dehydrogenase family protein (.1) Lus10016311 [exp] 140 / 2e-39 AT1G75180 353 / 2e-122 Erythronate-4-phosphate dehydrogenase family protein (.1.2.3) Lus10010803 [exp] 139 / 3e-39 AT1G75180 357 / 1e-123 Erythronate-4-phosphate dehydrogenase family protein (.1.2.3) Lus10042323 [exp] 127 / 1e-34 AT1G19400 238 / 3e-77 Erythronate-4-phosphate dehydrogenase family protein (.1.2) Lus10026339 [exp] 123 / 3e-33 AT1G19400 234 / 6e-76 Erythronate-4-phosphate dehydrogenase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G089600 [exp] 304 / 8e-104 AT1G01500 355 / 3e-123 Erythronate-4-phosphate dehydrogenase family protein (.1) Potri.002G163300 [exp] 282 / 3e-95 AT1G01500 354 / 1e-122 Erythronate-4-phosphate dehydrogenase family protein (.1) Potri.009G115800 [exp] 167 / 3e-50 AT1G75180 310 / 2e-105 Erythronate-4-phosphate dehydrogenase family protein (.1.2.3) Potri.002G260900 [exp] 161 / 9e-48 AT1G75180 348 / 2e-120 Erythronate-4-phosphate dehydrogenase family protein (.1.2.3)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10036394 pacid=23174662 polypeptide=Lus10036394 locus=Lus10036394.g ID=Lus10036394.BGIv1.0 annot-version=v1.0 ATGATGGGTCACCAGGAACACGAATCCAATCCCTACAGTATCATCTCCAGTTCGTCATGGCTGGAAATCCGCCTCTTCTACGTCCGGATCACCCCTTGCC TAATCGACACCGTACCCGACCACCTAGCCCTCCGCCACCTCCGCCACGAGACCAGCAACCATCTCGAAATCAACGGATCAAAGATCCCCGCGGACGATTC CGCCACCATCACCCTCCGCCGAGACCGCATCGACAAGGAGTCCTCCGAGGTCACCTACGTCAGCACCGACAGCGTCCGTGTCACCGGCGCTCTCGAATTC GAGGTCCTCGAAGGAGACCTCAAGGAGGAGGACGAAGGAGGAGAGAACAGTAGCAGCAGTGAACTGCTCCTTTGTGGATCATTCGAGAGGATGGAGTCGG CTTGGGCGGAGAACGATTCCAAGACCGGGTGGAGCATGGAGTGCTACGTTGCGGCGTCGGTCGGGGAAGGGAACTCGCTCTTCTTCCAGCCGAGGATGGG AGCTTCGGCTCCGGCGATCGAGGTCTACATCGCTGGCTGCTGCGGCGGCGTCCCGGTGATAATGACAAAGACGCTTATGTGTAGTGAATCCGGGGATGAT GATGAGTACGAGCCGGATGTCAAACTGGGAGCAAGATGCTACAACGAAGACTTGTATTACGGCGAGGATGGGCAGCTCACTTGGTTTAACGCAGGCGTTC GCGTCGGTGTAGGAATTGGCCTCGGAATGTGTGTTGGTTTCGGGATTGGGGTTGGTCTTCTCATGCGTTCGTACCAAGCAACTACCAGCAACTTTAGGCG GAGGTTCTTGTGA
AA sequence Show only first row Show all	>Lus10036394 pacid=23174662 polypeptide=Lus10036394 locus=Lus10036394.g ID=Lus10036394.BGIv1.0 annot-version=v1.0 MMGHQEHESNPYSIISSSSWLEIRLFYVRITPCLIDTVPDHLALRHLRHETSNHLEINGSKIPADDSATITLRRDRIDKESSEVTYVSTDSVRVTGALEF EVLEGDLKEEDEGGENSSSSELLLCGSFERMESAWAENDSKTGWSMECYVAASVGEGNSLFFQPRMGASAPAIEVYIAGCCGGVPVIMTKTLMCSESGDD DEYEPDVKLGARCYNEDLYYGEDGQLTWFNAGVRVGVGIGLGMCVGFGIGVGLLMRSYQATTSNFRRRFL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G01500			Erythronate-4-phosphate dehydr...		Lus10036394 [exp]	0	1
AT4G33920			Protein phosphatase 2C family ...		Lus10019302 [exp]	1.7	0.8627
AT4G12300		CYP706A4	"cytochrome P450, family 706, ...		Lus10032223 [exp]	5.7	0.8608
AT4G26450		WIP1	unknown protein		Lus10027095 [exp]	6.6	0.7436
AT3G62770		ATATG18A	autophagy 18a, Transducin/WD40...		Lus10041353 [exp]	7.1	0.8419
AT2G13100		AtG3Pp5	glycerol-3-phosphate permease ...		Lus10040002 [exp]	8.0	0.8156
AT5G40470			RNI-like superfamily protein (...		Lus10002515 [exp]	11.2	0.8099
AT5G61820			unknown protein		Lus10042158 [exp]	13.3	0.7872
AT1G20550			O-fucosyltransferase family pr...		Lus10014444 [exp]	14.0	0.8012
AT1G11050			Protein kinase superfamily pro...		Lus10012701 [exp]	17.0	0.7988
AT4G05150			Octicosapeptide/Phox/Bem1p fam...		Lus10002588 [exp]	17.5	0.7761

Compare expression of checked genes

Lus10036394 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.