Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G01490 120 / 2e-34 Heavy metal transport/detoxification superfamily protein (.1.2) AT5G52760 59 / 3e-11 Copper transport protein family (.1) AT5G52740 56 / 2e-10 Copper transport protein family (.1) AT5G52750 56 / 4e-10 Heavy metal transport/detoxification superfamily protein (.1) AT1G63950 52 / 6e-09 Heavy metal transport/detoxification superfamily protein (.1) AT5G23760 52 / 6e-09 Copper transport protein family (.1) AT5G26690 47 / 5e-07 Heavy metal transport/detoxification superfamily protein (.1) AT3G05920 46 / 1e-06 Heavy metal transport/detoxification superfamily protein (.1) AT5G03380 44 / 5e-05 Heavy metal transport/detoxification superfamily protein (.1.2) AT1G55790 42 / 5e-05 Domain of unknown function (DUF2431) (.1), Domain of unknown function (DUF2431) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007911 [exp] 130 / 6e-38 AT1G01490 128 / 2e-37 Heavy metal transport/detoxification superfamily protein (.1.2) Lus10014967 [exp] 94 / 3e-24 AT1G01490 100 / 9e-27 Heavy metal transport/detoxification superfamily protein (.1.2) Lus10027524 [exp] 92 / 4e-22 AT1G01490 100 / 2e-25 Heavy metal transport/detoxification superfamily protein (.1.2) Lus10027523 [exp] 87 / 9e-22 AT1G01490 77 / 3e-19 Heavy metal transport/detoxification superfamily protein (.1.2) Lus10039286 [exp] 89 / 4e-21 AT1G01490 97 / 2e-24 Heavy metal transport/detoxification superfamily protein (.1.2) Lus10027522 [exp] 80 / 3e-19 AT1G01490 83 / 7e-21 Heavy metal transport/detoxification superfamily protein (.1.2) Lus10039285 [exp] 78 / 3e-18 AT1G01490 74 / 3e-17 Heavy metal transport/detoxification superfamily protein (.1.2) Lus10028762 [exp] 72 / 6e-16 AT1G01490 74 / 3e-17 Heavy metal transport/detoxification superfamily protein (.1.2) Lus10024672 [exp] 67 / 2e-14 AT1G01490 64 / 1e-13 Heavy metal transport/detoxification superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G163400 [exp] 110 / 1e-30 AT1G01490 110 / 3e-31 Heavy metal transport/detoxification superfamily protein (.1.2) Potri.014G089700 [exp] 110 / 1e-30 AT1G01490 115 / 9e-33 Heavy metal transport/detoxification superfamily protein (.1.2) Potri.001G099500 [exp] 102 / 6e-28 AT1G01490 105 / 2e-29 Heavy metal transport/detoxification superfamily protein (.1.2) Potri.003G132200 [exp] 100 / 3e-27 AT1G01490 102 / 2e-28 Heavy metal transport/detoxification superfamily protein (.1.2) Potri.004G073000 [exp] 93 / 3e-24 AT1G01490 96 / 5e-26 Heavy metal transport/detoxification superfamily protein (.1.2) Potri.017G147500 [exp] 89 / 1e-22 AT1G01490 91 / 4e-24 Heavy metal transport/detoxification superfamily protein (.1.2) Potri.017G147400 [exp] 81 / 1e-19 AT1G01490 74 / 2e-17 Heavy metal transport/detoxification superfamily protein (.1.2) Potri.004G073100 [exp] 80 / 2e-19 AT1G01490 82 / 2e-20 Heavy metal transport/detoxification superfamily protein (.1.2) Potri.017G147300 [exp] 68 / 5e-15 AT1G01490 87 / 2e-22 Heavy metal transport/detoxification superfamily protein (.1.2) Potri.008G220100 [exp] 68 / 9e-15 AT1G01490 66 / 5e-14 Heavy metal transport/detoxification superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00403 [flax] [poplar] HMA Heavy-metal-associated domain
Representative CDS sequence Show only first row Show all	>Lus10036395 pacid=23174648 polypeptide=Lus10036395 locus=Lus10036395.g ID=Lus10036395.BGIv1.0 annot-version=v1.0 ATGAAGAAGGTGGTGCTGAAGCTAGATTTGCATGATGACAAGGCAAAGCAGAAGGCTTTGAAGACGGTTTCTACTCTAGCAGGAATTGATTCAATAGCGA TGGATATGAAGGAGAAGAAGATGACAGTGATTGGGACAGTGGATCCAGTAAACGTGGTGAGCAAACTCAGGAAACACTGGCCCACCACTGACATCATCTC TGTTGGGCCGGCGAAGGAGCCCGAAAAGAAAGAGGAGCCCAAGAAGGAAGAAGGCGCGAAGAAGGAGGAAGGAGGCCCAAATAAAGACGAGCCCAAGAAA GAAGAAGGCGGAGGAGGAGAAAAGAAAGCCGAGGAAAGTGGCGGGAAGAAGGACGAAGCTGCTGCTGCTGCTGCCGGCGGCGGCGGTGGAGAAAAAAAAG ATGGGGAGAAGAAGGAAGGCGACGGGGAGAAGAAAAAGGAGGAGCAGCCGGTTGCGGTGGCGAATGTGGCCCCGCAGCTGCCGCCGGACCCGGTGTTGGA GCTTGTGAAGGCTTATAGAGCATACAATCCTCAAATGACTAGCTACTACTATGTCCAGAGTATGGAGGAGAACCCAAATGCATGTGTCATATGTTGA
AA sequence Show only first row Show all	>Lus10036395 pacid=23174648 polypeptide=Lus10036395 locus=Lus10036395.g ID=Lus10036395.BGIv1.0 annot-version=v1.0 MKKVVLKLDLHDDKAKQKALKTVSTLAGIDSIAMDMKEKKMTVIGTVDPVNVVSKLRKHWPTTDIISVGPAKEPEKKEEPKKEEGAKKEEGGPNKDEPKK EEGGGGEKKAEESGGKKDEAAAAAAGGGGGEKKDGEKKEGDGEKKKEEQPVAVANVAPQLPPDPVLELVKAYRAYNPQMTSYYYVQSMEENPNACVIC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G01490			Heavy metal transport/detoxifi...		Lus10036395 [exp]	0	1
AT1G30090			Galactose oxidase/kelch repeat...		Lus10028121 [exp]	2.4	0.9138
AT5G46860		SGR3, ATVAM3, A...	SHOOT GRAVITROPISM 3, ARABIDOP...		Lus10000311 [exp]	5.0	0.9149
AT5G41350			RING/U-box superfamily protein...		Lus10032270 [exp]	5.1	0.9289
AT4G37670		NAGS2	N-acetyl-l-glutamate synthase ...		Lus10019262 [exp]	5.5	0.9277
AT5G53850			haloacid dehalogenase-like hyd...		Lus10015966 [exp]	6.0	0.9202
AT4G39235			unknown protein		Lus10021065 [exp]	7.4	0.8819
AT1G01490			Heavy metal transport/detoxifi...		Lus10017520 [exp]	8.7	0.9264
AT3G25570			Adenosylmethionine decarboxyla...		Lus10031919 [exp]	8.9	0.9122
AT1G12440			A20/AN1-like zinc finger famil...		Lus10028903 [exp]	13.0	0.9132
AT4G39090		EMB3005, RD19A,...	RESPONSIVE TO DEHYDRATION 19A,...		Lus10017489 [exp]	13.4	0.9106

Compare expression of checked genes

Lus10036395 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.