Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G12370 1216 / 0 SEC10 exocyst complex component sec10 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007908 [exp] 1510 / 0 AT5G12370 1330 / 0.0 exocyst complex component sec10 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G090100 [exp] 1324 / 0 AT5G12370 1286 / 0.0 exocyst complex component sec10 (.1.2.3) Potri.002G164100 [exp] 1303 / 0 AT5G12370 1301 / 0.0 exocyst complex component sec10 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0294 [flax] [poplar] Sec10 PF07393 [flax] [poplar] Sec10 Exocyst complex component Sec10
Representative CDS sequence Show only first row Show all	>Lus10036398 pacid=23174429 polypeptide=Lus10036398 locus=Lus10036398.g ID=Lus10036398.BGIv1.0 annot-version=v1.0 ATGAAAGAGGGCAAGGAAGCAAGCCGGGGTCATAGAGCTACCAAGTCTGCAACTGGTGGCTCTTCTCCGCTCATTCTTGATGTGGAAGACTTTAAGGGCG ATTTTTCGTTTGATGCATTATTTGGGGGACTGGTCAACAATTTACTCCCAGCTTTTCAAGAAGATGATGTGGATTCAGCAGAAGGACACGGTGATGGCAT GTCAAATGGGCATGTAAGAGCCCCATCTGATGCATCAAAATTTGCACAAGTGTTGTCTTCCCCTTTATTTCCTGAAGTGGATGCTCTCTTGGCTCTCTTC AGGGATTCTTGTAAAGAGTTGATTGACCTCCGAAAGCAGACTGATGGAAAGCTCAACAATCTCAAAAAGGAAGTCTCTGTCCAAGACTTAAAGCACAGGA AGACAATTGCCGAGCTTGAAAAAGGCGTAGATGGTTTGTTTAGCAGCTTTGCACGATTGGATTCACGTATTTCGAGTGTTGGGCAAACTGCTGCCAAGAT TGGAGATCATTTACAAAGTGCTGATGCTCAGAGAGAGACTGCCAGCCAGACTATAGAACTTATAAAGTACCTGATGGAGTTCAACAGCAGCCCAGGAGAC TTAATGGAACTGTCGCCTTTATTTTCGGACGATACCCGTGTTGCAGAAGCAGCTTCAATTGCTCAGAAATTGAGGTCATTTGCTGAAGAAGATATTGGAA GACAAGGAATTTCTGCACCATCTGTTGTGGGTAATGCTACAGCTAGCCGTGGATTGGAAGTTGCAGTTGCTAATCTTCAGGATTACTGTAACGAACTCGA GAACAGGCTGTTGTCTAAGTTTGATGCTGCGTCACAGAGAAGAGAACTGTCTACCATGGCAGAATGTGCCAAAATTTTGTCGCAGTTTAACAGAGGTACC AGTGCCATGCAACATTATGTTGCAACACGTCCAATGTTCATTGATGTGGAAGTTATGAACGCGGACACGAGATTGGTGCTAGGTGATCAGGGTTCACAAC CTAGTCCCAACAATGTTGCACGTGGTCTTTCTTCCTTGTACAAAGAAATCACAGATACCGTGCGCAAAGAAGCTGCTACAATAATGGCTGTATTCCCTTC TCCTAATGATGTCATGTCAATTTTGGTTCAGAGAGTTTTGGAGCAACGGGTTACTGCTCTTTTGGACAAATTGCTGGTGAAGCCATCTCTAATGAACTTG CCTTCTATTAAAGACGGTGGACTTTTGCCATACCTCAGGATGCTAGCAGTAGCATATGAGAAGACACAGGAGCTGGCTAGAGATCTACGTGCTGTTGGAT GCGGTGACTTGGATGTTGAGGGATTGACAGAATCTTTGTTTTCTTCTCACAAGGATGAGTATCCTGAACACGAGAGGGCATCTCTTAACCAACTTTATCA AGGAAAGATGGAGGAATTGCGTGCTGAAAGCCAGGTATCTGAGGGGAGTGGGACTATTGGCCGTTCAAAAGGAGCCTCAGTTGCATCTTCACACCAGCAG ATATCTGTTACTGTTGTGACAGAATTTGTTAGGTGGAATGAGGAAGCAATTTCAAGATGTGCTGTCTTTTCATCCCAGCCAGCGACCCTTGCTGCTAATG TAAAAGAAGTGTTCACATGCTTGCTTGACCAAGTCAGCCAATATATAACAGAAGGACTTGAGCGTGCAAGAGATGGCCTCATAGAAGCGGCAGCATTGAG GGAAAGGTTTGTGCTGGGCACAAACCTTAGTAGGAGGGTGGCTGCAGCAGCAGCTTCTGCCGCAGAAGCTGCTGCAGCTGCTGGGGAGAGCAGTTTCAGG TCTTTCATGGTTGCTGTCCAACGTTGTGGTAGCAGTGTTGCCATAGTTCAGCAGTATTTTGCAAACTCAATATCCCGGCTCTTGCTGCCCGTGGATGGTG CACATGCTTCTTCTTGTGAAGAAATGGCAACAGCTATGTCAAGTGCAGAGGCTGCTGCTTACAAGGGGCTTCAACAGTGTATTGAGACAGTAATGGCAGA GGTTGAGCGTTTGCTTTCAGCTGAGCAAAAGGCGACTGATTATCGATCACCTGATGATGGTATGATTCCCGATCATCGTCCAACAACTGCGTGCACGAGA GTGGTGGCCTACCTGTCACGCATCCTTGAGTCTGCATTCACTGCGTTGGAGGGTCAAAACAAACAAGCCTTCTTGACTGAATTGAATGGATCTAAATCAA TAAATGGAAGAATCGGTATCAGTCAGGGGCAAATTGTGGGTATTCTTGCGATAATGAATATTGGTGGAGGCCTGCGGCTGAAACGTGATATAACAGAGTA TGGAGAATTCCTGCGCAGTTTTAATGCTCCCACAGTTGATGAAAAGTTTGAATTATTGGGCATAATGGCGAATGTCTTTATTGTGGCGCCTGAAAGTCTC TCTAGTTTGTTTGAGGGTACTCCGAGTATCCGAAAAGATGCCCAAAGTCCTTTTGCAGGTTTATCCAGCTTAGAGACGATTACAAGAGCGCCAAACTCGC TTCGAAGCTCAGCGCCTTGTGGGCAAGCTCTGGTTGAGCAGAACTTGCGAACCAGCATCTGCAACTTACCTCGAGCATTTCAATGTGGATTCAGCTTGAA GCATATACATGCAAAATTCGCGAGCACCAAAGTCGAACGAAGCTCGTTTTTGTTTCGAATTCAGGCAGAAGGTGATGATGGTCTGTGGTTTGAAGTAACC AGTAAGCGTACTACTTTCTTAGCTTTTGAACAAGGATAG
AA sequence Show only first row Show all	>Lus10036398 pacid=23174429 polypeptide=Lus10036398 locus=Lus10036398.g ID=Lus10036398.BGIv1.0 annot-version=v1.0 MKEGKEASRGHRATKSATGGSSPLILDVEDFKGDFSFDALFGGLVNNLLPAFQEDDVDSAEGHGDGMSNGHVRAPSDASKFAQVLSSPLFPEVDALLALF RDSCKELIDLRKQTDGKLNNLKKEVSVQDLKHRKTIAELEKGVDGLFSSFARLDSRISSVGQTAAKIGDHLQSADAQRETASQTIELIKYLMEFNSSPGD LMELSPLFSDDTRVAEAASIAQKLRSFAEEDIGRQGISAPSVVGNATASRGLEVAVANLQDYCNELENRLLSKFDAASQRRELSTMAECAKILSQFNRGT SAMQHYVATRPMFIDVEVMNADTRLVLGDQGSQPSPNNVARGLSSLYKEITDTVRKEAATIMAVFPSPNDVMSILVQRVLEQRVTALLDKLLVKPSLMNL PSIKDGGLLPYLRMLAVAYEKTQELARDLRAVGCGDLDVEGLTESLFSSHKDEYPEHERASLNQLYQGKMEELRAESQVSEGSGTIGRSKGASVASSHQQ ISVTVVTEFVRWNEEAISRCAVFSSQPATLAANVKEVFTCLLDQVSQYITEGLERARDGLIEAAALRERFVLGTNLSRRVAAAAASAAEAAAAAGESSFR SFMVAVQRCGSSVAIVQQYFANSISRLLLPVDGAHASSCEEMATAMSSAEAAAYKGLQQCIETVMAEVERLLSAEQKATDYRSPDDGMIPDHRPTTACTR VVAYLSRILESAFTALEGQNKQAFLTELNGSKSINGRIGISQGQIVGILAIMNIGGGLRLKRDITEYGEFLRSFNAPTVDEKFELLGIMANVFIVAPESL SSLFEGTPSIRKDAQSPFAGLSSLETITRAPNSLRSSAPCGQALVEQNLRTSICNLPRAFQCGFSLKHIHAKFASTKVERSSFLFRIQAEGDDGLWFEVT SKRTTFLAFEQG

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G12370		SEC10	exocyst complex component sec1...		Lus10036398 [exp]	0	1
AT3G08530			Clathrin, heavy chain (.1)		Lus10007499 [exp]	3.9	0.9417
AT1G49340		ATPI4K ALPHA, A...	Phosphatidylinositol 3- and 4-...		Lus10040481 [exp]	6.0	0.9385
AT3G08530			Clathrin, heavy chain (.1)		Lus10037845 [exp]	6.2	0.9378
AT2G35110		NAPP, GRL, NAP1	NCK-ASSOCIATED PROTEIN 1, GNAR...		Lus10038353 [exp]	8.0	0.9311
AT4G21700			Protein of unknown function (D...		Lus10006025 [exp]	9.5	0.9206
AT2G35110		NAPP, GRL, NAP1	NCK-ASSOCIATED PROTEIN 1, GNAR...		Lus10036217 [exp]	9.8	0.9247
AT3G59770		AtSAC9, SAC9	ARABIDOPSIS THALIANA SUPPRESSO...		Lus10043474 [exp]	10.0	0.9354
AT3G43300		BEN1, ATMIN7	BFA-VISUALIZED ENDOCYTIC TRAFF...		Lus10038084 [exp]	10.4	0.9355
AT3G10380		SEC8, ATSEC8	subunit of exocyst complex 8 (...		Lus10037962 [exp]	11.5	0.9254
AT3G10380		SEC8, ATSEC8	subunit of exocyst complex 8 (...		Lus10038694 [exp]	12.4	0.9281

Compare expression of checked genes

Lus10036398 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.