Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10036400 pacid=23174382 polypeptide=Lus10036400 locus=Lus10036400.g ID=Lus10036400.BGIv1.0 annot-version=v1.0 ATGATCATGAGGAGCTCAATCTTAGCTCCAACAACTAATCTCTATAGGATTGGGGTGGTTGGTGACAATGATTTTGGGAGGGCATTGCTTGACCCGAACT CTCTTGACCGATTTACTAGCTCCACCGCTGCCTATGAGTTACCGACTCATCCTTCAAAAGACATGCATGCAGTTAGATTCGCAAACCACTTAGGAGCTTA CGGTTTCATGTTCTATTTCACTCCCCTCACGGATTCCCCTGCTGCTGTTTTGACTGCTTTGGAAGTGATAAACAGAACGCGTCAGTTTTCGGAAAACGGA ACTTCAACAAGGATCATATTCTCGGATTAA
AA sequence Show only first row Show all	>Lus10036400 pacid=23174382 polypeptide=Lus10036400 locus=Lus10036400.g ID=Lus10036400.BGIv1.0 annot-version=v1.0 MIMRSSILAPTTNLYRIGVVGDNDFGRALLDPNSLDRFTSSTAAYELPTHPSKDMHAVRFANHLGAYGFMFYFTPLTDSPAAVLTALEVINRTRQFSENG TSTRIIFSD

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10036400 [exp]	0	1
AT2G37900			Major facilitator superfamily ...		Lus10012663 [exp]	7.7	0.8995
					Lus10041251 [exp]	11.4	0.8941
AT1G49000			unknown protein		Lus10032453 [exp]	14.7	0.8688
AT1G31320	AS2	LBD4	LOB domain-containing protein ...		Lus10018275 [exp]	16.2	0.8401
					Lus10042011 [exp]	17.2	0.8741
AT4G01250	WRKY	ATWRKY22, WRKY2...	WRKY family transcription fact...		Lus10007907 [exp]	19.3	0.8820
AT1G31490			HXXXD-type acyl-transferase fa...		Lus10023806 [exp]	24.2	0.8696
AT4G24910			Protein of unknown function (D...		Lus10002345 [exp]	24.7	0.8749
AT2G36300			Integral membrane Yip1 family ...		Lus10021374 [exp]	35.3	0.8633
AT4G24910			Protein of unknown function (D...		Lus10003160 [exp]	37.3	0.8683

Compare expression of checked genes

Lus10036400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.