Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G64000 163 / 8e-51 WRKY ATWRKY56, WRKY56 WRKY DNA-binding protein 56 (.1) AT5G41570 159 / 2e-49 WRKY ATWRKY24, WRKY24 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 24, WRKY DNA-binding protein 24 (.1) AT2G46130 155 / 5e-49 WRKY ATWRKY43, WRKY43 WRKY DNA-binding protein 43 (.1.2) AT5G13080 130 / 2e-38 WRKY ATWRKY75, WRKY75 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 75, WRKY DNA-binding protein 75 (.1) AT3G01970 113 / 9e-32 WRKY ATWRKY45, WRKY45 WRKY DNA-binding protein 45 (.1) AT2G44745 111 / 3e-30 WRKY WRKY12 WRKY family transcription factor (.1) AT1G29860 108 / 2e-28 WRKY ATWRKY71, WRKY71 WRKY DNA-binding protein 71 (.1) AT4G18170 106 / 1e-27 WRKY ATWRKY28, WRKY28 WRKY DNA-binding protein 28 (.1) AT5G49520 107 / 2e-27 WRKY ATWRKY48, WRKY48 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 48, WRKY DNA-binding protein 48 (.1) AT1G69310 102 / 3e-26 WRKY ATWRKY57, WRKY57 WRKY DNA-binding protein 57 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007906 [exp] 237 / 2e-79 AT1G64000 168 / 6e-54 WRKY DNA-binding protein 56 (.1) Lus10012547 [exp] 130 / 6e-39 AT5G13080 172 / 2e-56 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 75, WRKY DNA-binding protein 75 (.1) Lus10011346 [exp] 129 / 8e-38 AT5G13080 179 / 1e-58 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 75, WRKY DNA-binding protein 75 (.1) Lus10003128 [exp] 129 / 9e-38 AT5G13080 179 / 2e-58 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 75, WRKY DNA-binding protein 75 (.1) Lus10041546 [exp] 127 / 1e-36 AT5G13080 171 / 1e-54 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 75, WRKY DNA-binding protein 75 (.1) Lus10017067 [exp] 110 / 1e-28 AT5G49520 184 / 2e-54 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 48, WRKY DNA-binding protein 48 (.1) Lus10037785 [exp] 108 / 1e-27 AT5G49520 179 / 4e-53 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 48, WRKY DNA-binding protein 48 (.1) Lus10004537 [exp] 106 / 1e-27 AT1G29860 188 / 1e-58 WRKY DNA-binding protein 71 (.1) Lus10004612 [exp] 104 / 1e-26 AT1G29860 188 / 3e-58 WRKY DNA-binding protein 71 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G090700 [exp] 177 / 3e-56 AT2G46130 169 / 2e-54 WRKY DNA-binding protein 43 (.1.2) Potri.002G164900 [exp] 176 / 4e-56 AT2G46130 172 / 6e-56 WRKY DNA-binding protein 43 (.1.2) Potri.001G058800 [exp] 134 / 8e-40 AT5G13080 171 / 2e-55 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 75, WRKY DNA-binding protein 75 (.1) Potri.017G066860 [exp] 134 / 2e-39 AT5G13080 178 / 1e-57 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 75, WRKY DNA-binding protein 75 (.1) Potri.003G169100 [exp] 130 / 1e-38 AT5G13080 168 / 2e-54 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 75, WRKY DNA-binding protein 75 (.1) Potri.001G328000 [exp] 131 / 2e-38 AT5G13080 174 / 2e-56 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 75, WRKY DNA-binding protein 75 (.1) Potri.015G099200 [exp] 128 / 2e-37 AT5G13080 154 / 2e-48 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 75, WRKY DNA-binding protein 75 (.1) Potri.002G138900 [exp] 116 / 3e-32 AT2G44745 224 / 9e-75 WRKY family transcription factor (.1) Potri.014G050000 [exp] 115 / 7e-32 AT2G44745 224 / 5e-74 WRKY family transcription factor (.1) Potri.010G147700 [exp] 111 / 5e-29 AT5G49520 182 / 8e-54 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 48, WRKY DNA-binding protein 48 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0274 [flax] [poplar] WRKY-GCM1 PF03106 [flax] [poplar] WRKY WRKY DNA -binding domain
Representative CDS sequence Show only first row Show all	>Lus10036401 pacid=23174397 polypeptide=Lus10036401 locus=Lus10036401.g ID=Lus10036401.BGIv1.0 annot-version=v1.0 ATGGAACCGCCGCCACCATCCACCGGAGGACAACCACCACCGCTAGCTCATAATAATCAAAACCCTCCTCCGGATCCGATGCTATTCGAATCCAACCCGC TTCTGCAGATTCCCTTCTCCTCCGCCAGCTCATCACTGATGCAGCAGCCGCTTCCGGAGATTGATTGGGTCAGCCTTCTGTCCGGCGGAGGACAGCTGAT GCAGATGGGGAATAGTGGCGTAATTAACGGGGGTGGTTATAATAATAACGAAGGGAATAATAATTATAGTACTAGCGATCATAATAATAAGGATAAGAAG AAAGCTGGAGGCGGCGGAGATCATCGGAGAAAAGCGGCGGCGAGGCCGAGGTTTGCTTTCCAGACGAGGAGTGAGGACGATATTCTGGATGACGGTTACC GTTGGAGAAAGTACGGCCAGAAGGCAGTCAAAAACAGCGCTTATCCCAGGAGCTACTACAGGTGCACGCACCACACATGCAGCGTGAAGAAGCAAGTGCA GAGGCTATCAAAGGACACAAGCATAGTTGTCACCACTTACGAAGGTATCCACAACCATCCTTGCGAGAAGCTCATGGAGACCCTCACCCCACTCCTCAAG CAGATGCAGTTCCTCACCGCTGCCGCTGCCGCCGCCTCCAGATTCTAG
AA sequence Show only first row Show all	>Lus10036401 pacid=23174397 polypeptide=Lus10036401 locus=Lus10036401.g ID=Lus10036401.BGIv1.0 annot-version=v1.0 MEPPPPSTGGQPPPLAHNNQNPPPDPMLFESNPLLQIPFSSASSSLMQQPLPEIDWVSLLSGGGQLMQMGNSGVINGGGYNNNEGNNNYSTSDHNNKDKK KAGGGGDHRRKAAARPRFAFQTRSEDDILDDGYRWRKYGQKAVKNSAYPRSYYRCTHHTCSVKKQVQRLSKDTSIVVTTYEGIHNHPCEKLMETLTPLLK QMQFLTAAAAAASRF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G64000	WRKY	ATWRKY56, WRKY5...	WRKY DNA-binding protein 56 (....		Lus10036401 [exp]	0	1
AT1G50430		ST7R, PA, LE, 7...	PARVA, LEPIDA, DWARF 5, DELTA5...		Lus10034811 [exp]	1.4	0.9617
AT3G08680			Leucine-rich repeat protein ki...		Lus10025210 [exp]	1.4	0.9636
AT1G29000			Heavy metal transport/detoxifi...		Lus10011893 [exp]	2.8	0.9582
AT5G13580		ABCG6	ATP-binding cassette G6, ABC-2...		Lus10001972 [exp]	5.5	0.9604
AT2G48140		EDA4	embryo sac development arrest ...		Lus10014683 [exp]	5.5	0.9571
AT4G37650	GRAS	SGR7, SHR	SHORT ROOT, SHOOT GRAVITROPISM...		Lus10019361 [exp]	6.6	0.9346
AT1G15000		SCPL50	serine carboxypeptidase-like 5...		Lus10026331 [exp]	7.3	0.9483
AT3G22600			Bifunctional inhibitor/lipid-t...		Lus10014681 [exp]	7.5	0.9488
AT5G58860		CYP86A1	"cytochrome P450, family 86, s...		Lus10018217 [exp]	8.8	0.9456
AT2G47810	CCAAT	NF-YB5	"nuclear factor Y, subunit B5"...		Lus10036575 [exp]	9.2	0.8819

Compare expression of checked genes

Lus10036401 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.