Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G01470 167 / 4e-54 LSR3, LEA14 LIGHT STRESS-REGULATED 3, LATE EMBRYOGENESIS ABUNDANT 14, Late embryogenesis abundant protein (.1) AT2G46140 158 / 2e-50 Late embryogenesis abundant protein (.1) AT2G44060 93 / 2e-23 Late embryogenesis abundant protein, group 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007905 [exp] 252 / 4e-88 AT1G01470 170 / 2e-55 LIGHT STRESS-REGULATED 3, LATE EMBRYOGENESIS ABUNDANT 14, Late embryogenesis abundant protein (.1) Lus10010140 [exp] 214 / 2e-72 AT1G01470 191 / 3e-63 LIGHT STRESS-REGULATED 3, LATE EMBRYOGENESIS ABUNDANT 14, Late embryogenesis abundant protein (.1) Lus10001869 [exp] 193 / 3e-64 AT1G01470 182 / 1e-59 LIGHT STRESS-REGULATED 3, LATE EMBRYOGENESIS ABUNDANT 14, Late embryogenesis abundant protein (.1) Lus10010139 [exp] 191 / 1e-63 AT1G01470 182 / 6e-60 LIGHT STRESS-REGULATED 3, LATE EMBRYOGENESIS ABUNDANT 14, Late embryogenesis abundant protein (.1) Lus10001876 [exp] 195 / 2e-61 AT1G01470 178 / 3e-54 LIGHT STRESS-REGULATED 3, LATE EMBRYOGENESIS ABUNDANT 14, Late embryogenesis abundant protein (.1) Lus10008337 [exp] 94 / 2e-23 AT2G44060 465 / 2e-165 Late embryogenesis abundant protein, group 2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G090800 [exp] 186 / 9e-62 AT2G46140 206 / 5e-69 Late embryogenesis abundant protein (.1) Potri.002G165000 [exp] 179 / 9e-59 AT2G46140 189 / 3e-62 Late embryogenesis abundant protein (.1) Potri.007G146300 [exp] 92 / 3e-23 AT2G44060 448 / 2e-159 Late embryogenesis abundant protein, group 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0159 [flax] [poplar] E-set PF03168 [flax] [poplar] LEA_2 Late embryogenesis abundant protein
Representative CDS sequence Show only first row Show all	>Lus10036402 pacid=23174591 polypeptide=Lus10036402 locus=Lus10036402.g ID=Lus10036402.BGIv1.0 annot-version=v1.0 ATGAAGAAGCCGGAAGCATCAGTAACCGACGTGGACATGAGGAGCGTCCACAGCGACCACGTAGAGTACGTGGCCAACATCGCCGTGAACAACCCGTACC CGGTCCCCCTGCCGGTATGCGAGATCACGTACTCGCTCAAGAGCGGCGGGCGGCAGATAGCCCACGGGTCGATGCCAGACCCGGGGTCGCTGAAGGCCAG CGGGGAGACGCTGCTGGACGTGCCGCTTAAAGTTGCGCACGGCATACTGGTGAGCCTTGTGAGGGACGTGGGGAAAGATTGGGATATTGACTACGATTTG GAGCTTGGTCTAGTGATTGATCTCCCTGTTTTCGGGAGCTTTACCATCCCGTTGGGGAAGAAGGGCGAGGTTAAGTTGCCTAGCTTGTCCGACGTTTTCT AA
AA sequence Show only first row Show all	>Lus10036402 pacid=23174591 polypeptide=Lus10036402 locus=Lus10036402.g ID=Lus10036402.BGIv1.0 annot-version=v1.0 MKKPEASVTDVDMRSVHSDHVEYVANIAVNNPYPVPLPVCEITYSLKSGGRQIAHGSMPDPGSLKASGETLLDVPLKVAHGILVSLVRDVGKDWDIDYDL ELGLVIDLPVFGSFTIPLGKKGEVKLPSLSDVF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G01470		LSR3, LEA14	LIGHT STRESS-REGULATED 3, LATE...		Lus10036402 [exp]	0	1
AT3G23110		EMB2800, AtRLP3...	EMBRYO DEFECTIVE 2800, recepto...		Lus10024721 [exp]	1.0	0.9527
AT1G45688			unknown protein		Lus10025793 [exp]	1.7	0.9207
AT5G17330		GAD1, GAD	GLUTAMATE DECARBOXYLASE 1, glu...		Lus10028530 [exp]	3.2	0.9078
AT1G01470		LSR3, LEA14	LIGHT STRESS-REGULATED 3, LATE...		Lus10007905 [exp]	4.7	0.9237
AT3G54700		PHT1;7	phosphate transporter 1;7 (.1)		Lus10003560 [exp]	5.3	0.9066
AT3G62470			Pentatricopeptide repeat (PPR)...		Lus10003461 [exp]	6.0	0.9070
AT1G17870		ATEGY3	ethylene-dependent gravitropis...		Lus10006140 [exp]	6.3	0.9078
AT5G16550			unknown protein		Lus10002085 [exp]	7.7	0.8916
AT1G64140			unknown protein		Lus10024712 [exp]	9.0	0.8962
AT4G02500		ATXT2, XXT2	XYG XYLOSYLTRANSFERASE 2, ARAB...		Lus10037520 [exp]	9.2	0.8842

Compare expression of checked genes

Lus10036402 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.