Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G46150 123 / 5e-35 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT3G54200 73 / 1e-15 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT4G23610 56 / 2e-09 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT3G05975 55 / 3e-09 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT4G23930 46 / 4e-06 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1), Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007904 [exp] 300 / 2e-104 AT2G46150 159 / 1e-48 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10017531 [exp] 85 / 5e-20 AT2G46150 98 / 5e-25 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10043084 [exp] 68 / 1e-13 AT3G54200 141 / 2e-41 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10032671 [exp] 68 / 1e-13 AT3G54200 141 / 1e-41 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10003238 [exp] 64 / 4e-12 AT3G54200 143 / 3e-42 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10018185 [exp] 63 / 4e-12 AT3G54200 153 / 9e-47 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10025649 [exp] 62 / 1e-11 AT3G54200 152 / 2e-46 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10035612 [exp] 60 / 8e-11 AT3G54200 142 / 8e-42 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10006764 [exp] 57 / 7e-10 AT3G54200 79 / 5e-18 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G165100 [exp] 139 / 4e-41 AT2G46150 184 / 1e-58 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.001G098100 [exp] 110 / 4e-30 AT2G46150 171 / 2e-53 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.003G133400 [exp] 103 / 2e-27 AT2G46150 164 / 7e-51 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.016G142300 [exp] 82 / 4e-19 AT3G54200 162 / 3e-50 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.001G098200 [exp] 76 / 5e-17 AT1G64065 102 / 2e-27 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.006G112800 [exp] 71 / 3e-15 AT3G54200 159 / 7e-49 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.016G142200 [exp] 71 / 5e-15 AT3G05975 105 / 2e-28 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.006G112700 [exp] 65 / 7e-13 AT3G05975 127 / 6e-37 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.002G230400 [exp] 63 / 2e-12 AT2G46150 82 / 3e-19 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.011G025100 [exp] 45 / 1e-05 AT2G46150 77 / 3e-17 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0159 [flax] [poplar] E-set PF03168 [flax] [poplar] LEA_2 Late embryogenesis abundant protein
Representative CDS sequence Show only first row Show all	>Lus10036403 pacid=23174517 polypeptide=Lus10036403 locus=Lus10036403.g ID=Lus10036403.BGIv1.0 annot-version=v1.0 ATGGACAAGAGCGATCAAACACGACCACTAGCACATATGATCTCCGACGACAACCGCCACTTCAGCCACGTAGAATCCGAAAGCAACGGGCTACCCGGCA ACCACAAATGCATCAAATGCTGCGGCTGCTTCTCCGCCGCGTTCCTCCTCCTAGCCGCCGTCCTCCTCGTCCTATCCCTCACCGTTTTACACGTTAGGAA CCCCATCATCCGGGTCAACGGCATCTCCGTCAGCCGCCAGCTGGCCTCTTCGTCCAACGTGTCATTGGTGGCACTCGTCACGGTGAAGAACCCCAACGCG GCGGCGTTCCGGTACGGCAACACCACCACCGCTGTGTACTATCGCGGGGTCAGCGTTGGGGAGGCGCGTGGTCCTCCCGGTAGCGTGGGCGCTAGGCGGG CTGTGAGGATGAACGTGACGGTGGATATTTCGGCGGATCGGGTTGTGGAGAGCCCCGATTTCGAGGCGGATTTCGGTTCCGGGGTTTTGGCACTGGAGAC GTGGTCCTGGATTCCCGGAAGGACGAAGGTGATGGGAATCGTGAAGCGCCACGTCACGATAGAGCTGAACTGCAGCGTTTCGGTCGACGTCTCGAACTGG TCGTTTCGGAGCGAGAAATGCAGGCACAAGTTCCAATTTTAG
AA sequence Show only first row Show all	>Lus10036403 pacid=23174517 polypeptide=Lus10036403 locus=Lus10036403.g ID=Lus10036403.BGIv1.0 annot-version=v1.0 MDKSDQTRPLAHMISDDNRHFSHVESESNGLPGNHKCIKCCGCFSAAFLLLAAVLLVLSLTVLHVRNPIIRVNGISVSRQLASSSNVSLVALVTVKNPNA AAFRYGNTTTAVYYRGVSVGEARGPPGSVGARRAVRMNVTVDISADRVVESPDFEADFGSGVLALETWSWIPGRTKVMGIVKRHVTIELNCSVSVDVSNW SFRSEKCRHKFQF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G46150			Late embryogenesis abundant (L...		Lus10036403 [exp]	0	1
AT1G33560		ADR1	ACTIVATED DISEASE RESISTANCE 1...		Lus10032759 [exp]	1.4	0.8379
AT1G32250			Calcium-binding EF-hand family...		Lus10030986 [exp]	3.9	0.8713
AT4G23650		CDPK6, CPK3	Calcium dependent protein kina...		Lus10017537 [exp]	6.0	0.8274
AT2G29060	GRAS		GRAS family transcription fact...		Lus10016520 [exp]	8.2	0.8056
AT5G05340			Peroxidase superfamily protein...		Lus10029065 [exp]	8.5	0.8259
AT3G60580	C2H2ZnF		C2H2-like zinc finger protein ...		Lus10004724 [exp]	10.0	0.8323
AT2G20830			transferases;folic acid bindin...		Lus10039788 [exp]	10.2	0.7935
AT3G27540			beta-1,4-N-acetylglucosaminylt...		Lus10022281 [exp]	10.4	0.8333
AT4G21380		ARK3	receptor kinase 3 (.1)		Lus10025891 [exp]	12.6	0.8299
AT4G24060	DOF	AtDof4,6	Dof-type zinc finger DNA-bindi...		Lus10003208 [exp]	13.8	0.8204

Compare expression of checked genes

Lus10036403 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.