Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G61550 104 / 6e-29 RING/U-box superfamily protein (.1) AT2G46160 101 / 7e-28 RING/U-box superfamily protein (.1) AT2G35910 74 / 4e-17 RING/U-box superfamily protein (.1) AT5G06490 68 / 6e-15 RING/U-box superfamily protein (.1) AT2G20030 68 / 2e-14 RING/U-box superfamily protein (.1) AT2G46493 66 / 2e-14 RING/U-box superfamily protein (.1) AT5G53110 68 / 3e-14 RING/U-box superfamily protein (.1) AT2G25409 65 / 4e-14 unknown protein AT5G40250 66 / 8e-14 RING/U-box superfamily protein (.1) AT5G07040 64 / 1e-13 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041079 [exp] 145 / 4e-45 AT3G61550 239 / 1e-80 RING/U-box superfamily protein (.1) Lus10023086 [exp] 69 / 1e-14 AT5G53110 161 / 1e-59 RING/U-box superfamily protein (.1) Lus10032382 [exp] 68 / 3e-14 AT5G53110 237 / 1e-74 RING/U-box superfamily protein (.1) Lus10034953 [exp] 67 / 6e-14 AT2G20030 278 / 2e-90 RING/U-box superfamily protein (.1) Lus10012628 [exp] 67 / 7e-14 AT5G53110 284 / 5e-93 RING/U-box superfamily protein (.1) Lus10025146 [exp] 64 / 8e-14 AT3G10910 128 / 8e-38 RING/U-box superfamily protein (.1) Lus10003400 [exp] 63 / 3e-13 AT5G53110 152 / 3e-45 RING/U-box superfamily protein (.1) Lus10005389 [exp] 63 / 3e-13 AT5G07040 154 / 9e-49 RING/U-box superfamily protein (.1) Lus10036380 [exp] 62 / 3e-13 AT5G05280 96 / 2e-25 RING/U-box superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G091000 [exp] 120 / 2e-35 AT3G61550 176 / 1e-55 RING/U-box superfamily protein (.1) Potri.002G165200 [exp] 117 / 2e-34 AT3G61550 204 / 5e-67 RING/U-box superfamily protein (.1) Potri.010G243400 [exp] 72 / 7e-17 AT2G35910 152 / 4e-47 RING/U-box superfamily protein (.1) Potri.006G201500 [exp] 70 / 5e-16 AT2G35910 122 / 4e-35 RING/U-box superfamily protein (.1) Potri.015G017800 [exp] 72 / 6e-16 AT5G53110 389 / 1e-134 RING/U-box superfamily protein (.1) Potri.016G067900 [exp] 70 / 6e-16 AT2G35910 129 / 7e-38 RING/U-box superfamily protein (.1) Potri.010G243200 [exp] 68 / 3e-15 AT5G06490 138 / 2e-41 RING/U-box superfamily protein (.1) Potri.008G019000 [exp] 68 / 3e-15 AT5G06490 131 / 8e-39 RING/U-box superfamily protein (.1) Potri.010G243500 [exp] 67 / 4e-15 AT5G06490 113 / 6e-32 RING/U-box superfamily protein (.1) Potri.001G435800 [exp] 69 / 6e-15 AT3G20395 153 / 4e-46 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10036404 pacid=23174417 polypeptide=Lus10036404 locus=Lus10036404.g ID=Lus10036404.BGIv1.0 annot-version=v1.0 ATGACGAAGGACGCAACGGGGAGAATTCCGTCTCCGCCGTCGGCCTCGATCCGGCGGGGGTGCACCCACTTCCCACATCTCAGATTCCAATTCTCCAAGG AGGCCGCGGCCGCGGCCTCCGGTGTTGGTAATAATAACGGCGTGGAAACGATGTGCTCGATCTGCCTGTGCGAGTACAAGGATCTGGAGATGATGAGGAT GATGCCGGAGTGCCGCCATTACTTCCACCTGTGGTGTCTCGACGCTTGGCTGAAGCTCAACGGATCTTGCCCCGTCTGCCGGAACTCGCCGCTGCCGACT CCGCTGTCCACGCCTCTCTCGGAGGTCGTGCCTCTGTCTCAGCATGCTGCTGATCGTAGAAGGAGGTAG
AA sequence Show only first row Show all	>Lus10036404 pacid=23174417 polypeptide=Lus10036404 locus=Lus10036404.g ID=Lus10036404.BGIv1.0 annot-version=v1.0 MTKDATGRIPSPPSASIRRGCTHFPHLRFQFSKEAAAAASGVGNNNGVETMCSICLCEYKDLEMMRMMPECRHYFHLWCLDAWLKLNGSCPVCRNSPLPT PLSTPLSEVVPLSQHAADRRRR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G61550			RING/U-box superfamily protein...		Lus10036404 [exp]	0	1
AT3G61550			RING/U-box superfamily protein...		Lus10041079 [exp]	2.0	0.8690
AT1G09680			Pentatricopeptide repeat (PPR)...		Lus10014170 [exp]	3.5	0.8397
AT2G03690			coenzyme Q biosynthesis Coq4 f...		Lus10026671 [exp]	9.4	0.8659
AT4G05460			RNI-like superfamily protein (...		Lus10038528 [exp]	12.2	0.8041
AT2G21170		PDTPI, TIM	PLASTID ISOFORM TRIOSE PHOSPHA...		Lus10012171 [exp]	13.5	0.8289
AT2G18840			Integral membrane Yip1 family ...		Lus10025478 [exp]	16.7	0.8456
AT5G42450			Pentatricopeptide repeat (PPR)...		Lus10034408 [exp]	16.9	0.7661
AT2G38360		PRA1.B4	prenylated RAB acceptor 1.B4 (...		Lus10002853 [exp]	18.4	0.8311
AT3G08640			Protein of unknown function (D...		Lus10035607 [exp]	18.8	0.8424
AT2G20690			lumazine-binding family protei...		Lus10021323 [exp]	19.0	0.8143

Compare expression of checked genes

Lus10036404 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.