Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G46180 582 / 0 GC4 golgin candidate 4 (.1) AT3G61570 545 / 0 GC3 ,GDAP1 GOLGIN CANDIDATE 3, GRIP-related ARF-binding domain-containing protein 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041081 [exp] 1181 / 0 AT2G46180 676 / 0.0 golgin candidate 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G165500 [exp] 759 / 0 AT2G46180 609 / 0.0 golgin candidate 4 (.1) Potri.014G091300 [exp] 735 / 0 AT2G46180 587 / 0.0 golgin candidate 4 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10036406 pacid=23174378 polypeptide=Lus10036406 locus=Lus10036406.g ID=Lus10036406.BGIv1.0 annot-version=v1.0 ATGTGGAGCTCTCTTGAGAGTCTGAAGCAAAACCTAAACAAGATTGCGCTCGACGTACATGACGATGATGACGACGACGAGCTCGATATCTACGGTTTCG GTAATGGCGGTGATTCCCTGGTATCTGATCGCAGGAACTCCCACAGCTCCGCGCATGCCAATTCGGTCTCGCCATCTCATATTGCTAACGGCGTTGATTC GCCCTACACATCCGAGATCGAACAGTACAAGTCAGAGATTAGAAGGCTTCGAGAATCTGAAGCTGAAATCAAAGCATTGTCTGTCAATTATGCTGCTCTA CTGAAAGAGAAGGAGGATCAAATTTCCAGGTTGGACCGAGAAAAGGGTATAATGAAGCAAAATTTTGAAGCAACGAAGGAAGCCTTCAATACATACAGAA CTGATAATTCAAGAGCTTCATCAAATAGCTCGAATGGAATCAAGAAAAGTGGTGAACAATCTCCCAAACGCCCCAATAAATCATCAGCACAAGCGAAAAA CCGTTATGCTGGAAGTTACCTTCAAAATGGAGTTTCGTCAAAACTAGAAGGAGTAAGCAATGGTATGTTACATGACCGATCTGACAATGGAAATAGTTCA TCAGGGAAGGAAAAGGAGCTTGCAGATTCGCTGGAGGACAAAAGCCGGTCCATGGAAGTGATGCTAGCTAGCCATGGCCTGGAAATAAAGCAGCTAACTT TGGAACTTGAGAAAGAAAGAGGAAGGTTAGCAAATGTCCAACAACAACTGCAAGAGGAACACAAGTTGAATGAATCTTTTCAGGAGGAGCTTAGGGTGCT ACAAGTTGATAAGCACAAGGCCACTACCGAGTTCAACAGACTACAAACTGAATTAAATGGAAAATTATCAGAGATGAGTAGACTGCAGATGGAATTGACT AGGCAAAGAGTGGAAAATGCTGATGATAAAACAGACAGTTTAAATAAAACTGTTGAAAATCTGAAGAGGGAAAACATTGTCCTTAAGGTGTCCAAGAAAG AACTTGAAGCTGCCTTGGAAAAGAGCATTAAATCTTCTGCGGAAAATATTGTTCCAGATGGGGTGGTAGATTCTTCAGGCAGTTTCCCTGAGAGGAAAGA ACTTGAAGCATCACTGCAGAAGATGGAGAGAGACCTCAGGGAGGCACGCAGTGACAAGGAGAAAGCATTGCAAGAGTTGAATCGTCTTAAGCAGCATTTA CTTGAAAAGGAGTCTGAAGAATCTGAGAAAATGGATCAGGACAGTGAAATTATAGAAGAACTTCGTCAGAATAATGAGTATCTAAAGGCTCAGATATCAC ATCTTGAGAAAGCTTTGAAACAGGCAATTGCAAATCATGACGATATCAGGGTGAAGAACAACATTGACACTCTGAAGTCCAAAGAAATGATCGAGGATTT GAACAGAAAATTGGCGGAGTGTATGAGCACAATAGAATATAAGAATGTAGAGATCTTAAATTTACAAACAGCCCTTGGACAGTACTTTGCAGAAGTGGAA GCTAAGGAACACTTGGAGCGGCAATTGGCATTAGCAAGAGAAGAATCAGCAAAGTTTTCAGCTCTCTTGCAAGATGTAGAACAAGGATCTGAGGCACTAA AGAAGGAAAAGGATGAAATTATTGTGAAACTTTCAAACACAGAGAGGAAACTCGAGGAGGGCAGAAACAGGGTAAATAAGCTTGAAGAGGACAATGGAAA ACTACGCCGTGCAGTAGAGCAGAGCATGACTAGGCTTAACAGAATGTCTATGGACTCTGATTTTCTAGTCGACAGGCGCATTGTCATCAAATTGCTTGTG ACCTACTTCCAGAGAAACCACAGCAAAGAGGTCTTAGATCTTATGGTCCGGATGCTTGGGTTTACTGACGAAGACAAACAAAGGATCGGCGTTGCACAAC AAGGTGGCAAAGGAGTTGTTCGAGGAGTCCTCGGACTACCTGGTCGCCTTGTTGGTGGAATCCTTGGCGGAGGATCGGCAGATGCACATGGAAATGCAGC ATCCGAAAACCAGTCTTTCGCAGATCTGTGGGTTGATTTTCTACTCAAGGAAAACGAAGAGCGTGAGAGGAGGGAGTCTAGTACAGCTGATGCAGGTAAA AGCCCGGATGCACCTGGGGGAGCAAATACGTCTTCTCCCGATCATATTACAAGCACGAGCAGTAATATCTCTGGTTCTTCGAGACCTAGTTTTGGCTCGT CCATAAACTATAATAGTGAGCTGCCATCACAGAGGAACATGCGGCACTATGAGCAGTCATCTGATTCCGAATTTTCGACAGTTCCTTTAACATCCTTCGA TAGCAATCCTCGTCTTCCAAGATTTGCCCGGCAACATTGA
AA sequence Show only first row Show all	>Lus10036406 pacid=23174378 polypeptide=Lus10036406 locus=Lus10036406.g ID=Lus10036406.BGIv1.0 annot-version=v1.0 MWSSLESLKQNLNKIALDVHDDDDDDELDIYGFGNGGDSLVSDRRNSHSSAHANSVSPSHIANGVDSPYTSEIEQYKSEIRRLRESEAEIKALSVNYAAL LKEKEDQISRLDREKGIMKQNFEATKEAFNTYRTDNSRASSNSSNGIKKSGEQSPKRPNKSSAQAKNRYAGSYLQNGVSSKLEGVSNGMLHDRSDNGNSS SGKEKELADSLEDKSRSMEVMLASHGLEIKQLTLELEKERGRLANVQQQLQEEHKLNESFQEELRVLQVDKHKATTEFNRLQTELNGKLSEMSRLQMELT RQRVENADDKTDSLNKTVENLKRENIVLKVSKKELEAALEKSIKSSAENIVPDGVVDSSGSFPERKELEASLQKMERDLREARSDKEKALQELNRLKQHL LEKESEESEKMDQDSEIIEELRQNNEYLKAQISHLEKALKQAIANHDDIRVKNNIDTLKSKEMIEDLNRKLAECMSTIEYKNVEILNLQTALGQYFAEVE AKEHLERQLALAREESAKFSALLQDVEQGSEALKKEKDEIIVKLSNTERKLEEGRNRVNKLEEDNGKLRRAVEQSMTRLNRMSMDSDFLVDRRIVIKLLV TYFQRNHSKEVLDLMVRMLGFTDEDKQRIGVAQQGGKGVVRGVLGLPGRLVGGILGGGSADAHGNAASENQSFADLWVDFLLKENEERERRESSTADAGK SPDAPGGANTSSPDHITSTSSNISGSSRPSFGSSINYNSELPSQRNMRHYEQSSDSEFSTVPLTSFDSNPRLPRFARQH

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G46180		GC4	golgin candidate 4 (.1)		Lus10036406 [exp]	0	1
AT2G46180		GC4	golgin candidate 4 (.1)		Lus10041081 [exp]	1.0	0.9794
AT1G75850		VPS35B	VPS35 homolog B (.1)		Lus10013565 [exp]	2.0	0.9368
AT5G65290			LMBR1-like membrane protein (....		Lus10025735 [exp]	2.4	0.9192
AT1G75850		VPS35B	VPS35 homolog B (.1)		Lus10017272 [exp]	2.4	0.9361
AT1G04910			O-fucosyltransferase family pr...		Lus10037830 [exp]	2.6	0.9107
AT5G43710			Glycosyl hydrolase family 47 p...		Lus10041170 [exp]	2.8	0.9238
AT1G11660			heat shock protein 70 (Hsp 70)...		Lus10040078 [exp]	4.5	0.8908
AT4G02030			Vps51/Vps67 family (components...		Lus10041387 [exp]	4.7	0.8903
AT3G53570		AME2, AFC1	FUS3-complementing gene 1 (.1....		Lus10025301 [exp]	4.9	0.8886
AT4G32160			Phox (PX) domain-containing pr...		Lus10002925 [exp]	5.0	0.9218

Compare expression of checked genes

Lus10036406 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.