Plant FIBer expression Database

Lus10036407 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10039313
[exp]
45 / 3e-05 AT5G52900 107 / 4e-28 MEMBRANE-ASSOCIATED KINASE REGULATOR 6, unknown protein
Lus10027554
[exp]
41 / 0.0006 AT5G52900 108 / 3e-27 MEMBRANE-ASSOCIATED KINASE REGULATOR 6, unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.014G091500
[exp]
93 / 6e-23 AT5G52900 72 / 4e-15 MEMBRANE-ASSOCIATED KINASE REGULATOR 6, unknown protein
PFAM info
Representative CDS sequence
>Lus10036407 pacid=23174393 polypeptide=Lus10036407 locus=Lus10036407.g ID=Lus10036407.BGIv1.0 annot-version=v1.0
ATGGATCAGTACTCATCATCATCACATTCTCTAGCTATAGAAAGTTTCTCCAACAGCTGGCTCACAAACTCACCTCCCTCCTTCTTGGATTCTCTTGAAA
CATCTCCTTCCGTCAGGCCATCTGTCGATGGTTTCCATGATTTCAACAACTCCTGCAGAGAATTAAGGTCTAGAACATCTGTACAAGAAGAATCACACAA
GTTTTACTTTGACCTTCCACCTGTTTCTTCTTCAGCTATTGCTCCCGCTGACCAGCTTTTCTCAGACGGACTCATCAAGCCAACTGCTTCTTCTTCTTCT
TTCACCAAATCACATACTACGAACCCTTCACTGTCACCTGATCCGACTCCTCCTCCTTCGTCTTCGAAAAGGGCTGCTGTTGTTGCTACTGTGAACATCC
AGTGCCAAGTGTTTGGCAGGTGGAGGAAGCTGTCAACTCGTATACTGGTCAAGTGTTTCAGACGCATGAAACGTTCGTTTGTAGTAAGGAGCTCAAGGAA
GAGTATAAAGGTGGATGATGTAGGGATCAGAAGAGCTCTCCAAGTCAGAAGCTTGACCAATTCTCCATCAAGCACGACTTATTCGACCGATGGTAATTGG
TCCGACATGGATTCTTCAATATATGAAGCTGTCCTTCATTGCAAAAGGTCAGTAGGTTTGTTTCTCTGGTCTGCAGCTCTTTCCTCCTCTTTTGTAACTA
TGAACGTTTCTTATAAAGCTGATTGTTTTAACTGCCATCAGGTAAATGACTCTGCTCAAACATGA
AA sequence
>Lus10036407 pacid=23174393 polypeptide=Lus10036407 locus=Lus10036407.g ID=Lus10036407.BGIv1.0 annot-version=v1.0
MDQYSSSSHSLAIESFSNSWLTNSPPSFLDSLETSPSVRPSVDGFHDFNNSCRELRSRTSVQEESHKFYFDLPPVSSSAIAPADQLFSDGLIKPTASSSS
FTKSHTTNPSLSPDPTPPPSSSKRAAVVATVNIQCQVFGRWRKLSTRILVKCFRRMKRSFVVRSSRKSIKVDDVGIRRALQVRSLTNSPSSTTYSTDGNW
SDMDSSIYEAVLHCKRSVGLFLWSAALSSSFVTMNVSYKADCFNCHQVNDSAQT

DESeq2's median of ratios [FLAX]

Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
Lus10036407
[exp]
0 1
AT2G43210 Ubiquitin-like superfamily pro... Lus10025504
[exp]
5.5 0.8146
Lus10016821
[exp]
5.6 0.8189
AT2G26730 Leucine-rich repeat protein ki... Lus10032162
[exp]
14.1 0.6866
Lus10035412
[exp]
14.9 0.8065
Lus10033211
[exp]
16.1 0.7852
Lus10031014
[exp]
22.4 0.8014
AT5G05365 Heavy metal transport/detoxifi... Lus10009848
[exp]
34.2 0.7677
AT5G62960 unknown protein Lus10027692
[exp]
34.3 0.7377
AT2G17820 AHK1, ATHK1 histidine kinase 1 (.1) Lus10028438
[exp]
36.0 0.7166
AT5G03530 ATRABALPHA, AtR... ARABIDOPSIS THALIANA RAB GTPAS... Lus10021507
[exp]
42.9 0.7473

Lus10036407 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.