Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G46210 677 / 0 AtSLD2 sphingoid LCB desaturase 2, Fatty acid/sphingolipid desaturase (.1) AT3G61580 657 / 0 AtSLD1 sphingoid LCB desaturase 1, Fatty acid/sphingolipid desaturase (.1) AT5G53560 66 / 9e-13 B5#2, ATB5-A, ATCB5-E ARABIDOPSIS CYTOCHROME B5 ISOFORM E, cytochrome B5 isoform E (.1) AT1G26340 62 / 2e-11 B5 #6, B5#6, ATCB5-A ARABIDOPSIS CYTOCHROME B5 ISOFORM A, cytochrome B5 isoform A (.1) AT5G48810 61 / 3e-11 B5#3, ATB5-B, ATCB5-D ARABIDOPSIS CYTOCHROME B5 ISOFORM D, cytochrome B5 isoform D (.1) AT2G32720 59 / 2e-10 B5 #4, B5#4, ATCB5-B ARABIDOPSIS CYTOCHROME B5 ISOFORM B, cytochrome B5 isoform B (.1) AT1G60660 57 / 8e-10 B5 #5, B5#5, ATCB5LP ARABIDOPSIS CYTOCHROME B5-LIKE PROTEIN, cytochrome B5-like protein (.1) AT2G46650 52 / 7e-08 B5 #1, B5#1, ATCB5-C ARABIDOPSIS CYTOCHROME B5 ISOFORM C, cytochrome B5 isoform C (.1) AT1G77760 55 / 8e-08 GNR1, NIA1 nitrate reductase 1 (.1) AT5G09680 53 / 9e-08 RLF reduced lateral root formation (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041083 [exp] 748 / 0 AT2G46210 595 / 0.0 sphingoid LCB desaturase 2, Fatty acid/sphingolipid desaturase (.1) Lus10035482 [exp] 633 / 0 AT3G61580 659 / 0.0 sphingoid LCB desaturase 1, Fatty acid/sphingolipid desaturase (.1) Lus10031102 [exp] 632 / 0 AT3G61580 659 / 0.0 sphingoid LCB desaturase 1, Fatty acid/sphingolipid desaturase (.1) Lus10011858 [exp] 60 / 1e-10 AT2G32720 211 / 5e-72 ARABIDOPSIS CYTOCHROME B5 ISOFORM B, cytochrome B5 isoform B (.1) Lus10012954 [exp] 58 / 2e-10 AT1G60660 133 / 1e-41 ARABIDOPSIS CYTOCHROME B5-LIKE PROTEIN, cytochrome B5-like protein (.1) Lus10000651 [exp] 59 / 3e-10 AT1G26340 194 / 7e-65 ARABIDOPSIS CYTOCHROME B5 ISOFORM A, cytochrome B5 isoform A (.1) Lus10022794 [exp] 59 / 4e-10 AT2G32720 211 / 1e-71 ARABIDOPSIS CYTOCHROME B5 ISOFORM B, cytochrome B5 isoform B (.1) Lus10036973 [exp] 58 / 6e-10 AT1G26340 193 / 8e-65 ARABIDOPSIS CYTOCHROME B5 ISOFORM A, cytochrome B5 isoform A (.1) Lus10012615 [exp] 57 / 9e-10 AT2G32720 135 / 4e-42 ARABIDOPSIS CYTOCHROME B5 ISOFORM B, cytochrome B5 isoform B (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G165800 [exp] 707 / 0 AT2G46210 728 / 0.0 sphingoid LCB desaturase 2, Fatty acid/sphingolipid desaturase (.1) Potri.014G091800 [exp] 703 / 0 AT2G46210 721 / 0.0 sphingoid LCB desaturase 2, Fatty acid/sphingolipid desaturase (.1) Potri.006G228200 [exp] 624 / 0 AT2G46210 620 / 0.0 sphingoid LCB desaturase 2, Fatty acid/sphingolipid desaturase (.1) Potri.001G314200 [exp] 64 / 4e-12 AT2G32720 199 / 3e-67 ARABIDOPSIS CYTOCHROME B5 ISOFORM B, cytochrome B5 isoform B (.1) Potri.012G024600 [exp] 62 / 1e-11 AT5G53560 163 / 5e-53 ARABIDOPSIS CYTOCHROME B5 ISOFORM E, cytochrome B5 isoform E (.1) Potri.010G156900 [exp] 62 / 2e-11 AT1G26340 166 / 4e-54 ARABIDOPSIS CYTOCHROME B5 ISOFORM A, cytochrome B5 isoform A (.1) Potri.015G007600 [exp] 61 / 4e-11 AT5G53560 153 / 8e-49 ARABIDOPSIS CYTOCHROME B5 ISOFORM E, cytochrome B5 isoform E (.1) Potri.017G054300 [exp] 59 / 2e-10 AT2G32720 221 / 6e-76 ARABIDOPSIS CYTOCHROME B5 ISOFORM B, cytochrome B5 isoform B (.1) Potri.002G242500 [exp] 59 / 3e-10 AT2G32720 221 / 7e-76 ARABIDOPSIS CYTOCHROME B5 ISOFORM B, cytochrome B5 isoform B (.1) Potri.018G087600 [exp] 54 / 1e-08 AT1G60660 155 / 4e-50 ARABIDOPSIS CYTOCHROME B5-LIKE PROTEIN, cytochrome B5-like protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00173 [flax] [poplar] Cyt-b5 Cytochrome b5-like Heme/Steroid binding domain PF00487 [flax] [poplar] FA_desaturase Fatty acid desaturase
Representative CDS sequence Show only first row Show all	>Lus10036408 pacid=23174672 polypeptide=Lus10036408 locus=Lus10036408.g ID=Lus10036408.BGIv1.0 annot-version=v1.0 ATGGCGTCCCAAAAGAAATACATTACAGCCGACGACCTCCTAAAGCACAACAAGTCTGGGGATATTTGGATCTCCATCCAGGGCAAGGTCTACGACGTCT CCGAATGGGTCAAGATCCATCCCGGCGGCGAGGTCGCCATCCTCAACCTCGCCGGCCAGGACGTCACCGACGCCTTCATCGCTTACCATCCGGGTACCGC CTGGAAGAATCTCGACAACCTCTTCACCGGCTACCACATCAAGGACTACACCGCCTCCGACGTCTCCAAGGACTACCGTCGCCTTGCCACGGAGTTCTCG AAGCTAGGGTTGTTCGACAAAAAAGGACACATCGCCGTCTGCGCATTAGCGGCCGTTGCGGTGCTCCTCTCGCTGGTTGTCTACGGCGTCGTTCGCTGCG ATTCCCCCTGGGCCCACTTCGGATCGGCTATCCTGCTAGGGTTTCTGTGGATCCAGAGCGCGTACGTGGGTCATGATTCGGGTCATTACCAGGTCATGAC GACCCGAGGATACAACAAACTCGCGCAGCTCCTCGCCGGAAACTGCCTCACCGGAATCAGCATAGCGTGGTGGAAGTGGACTCACAACGCGCATCACCTC GCCGTGAATAGCCTCGATTACGATCCAGATCTACAGCACATCCCGGTCTTCGCAGTCTCCAACCGCCTCTTCGATTCGATCAGATCCGTTTTCTACGGCC GTAGCTTAAGCTTCGATCCAGTAGCCAGATTCCTCGTGAGCTACCAGCACTGGGCGTTCTACCCGGTAATGTGCGTTGCGAGAGTAAATCTCTACCTCCA GACTTTCATCCTCCTCCTCTCCCCGAGCCGGAACGTTCCCGACAGAGCTCTCAACATCGCCGGAACGATGGTGTTCTGGACCTGGTTCCCCTTTCTCGTC GCCTGCCTACCAAACTGGCCGGAGAGGTTCATGTTCGTGCTGACTTCATTCGCAGTTTGCTCAGTCCAGCACGTTCAATTCTGCCTCAATCATTTCCCAG CGAATCATTACATGGGGCCTCCAGGAGCCAACGATTGGTTCGAGAAACAGACGAAAGGAACGGTGAACATCTCTTGCCCGTCGTGGATGGATTGGTTCCA CGGAGGATTGCAGTTCCAGCTGGAGCATCATTTGTTCCCTAGGTTGCCCAGATGCCAGCTGAGGAAAGTGTCGCCGGTGGTTCAAGATCTGTGCAAGAAG CACAACCTTCCTTACAGAAGCTACTCGTTCTTCGAAGCTAATGTTTGTACGATCAAGACGTTGAGGGAGGTGGCTTTACAGGCTAGGGACCTGGCAAACC CCGTTCCTAAGAATCTGGTATGGGAAGCTGTTCATACACATGGTTGA
AA sequence Show only first row Show all	>Lus10036408 pacid=23174672 polypeptide=Lus10036408 locus=Lus10036408.g ID=Lus10036408.BGIv1.0 annot-version=v1.0 MASQKKYITADDLLKHNKSGDIWISIQGKVYDVSEWVKIHPGGEVAILNLAGQDVTDAFIAYHPGTAWKNLDNLFTGYHIKDYTASDVSKDYRRLATEFS KLGLFDKKGHIAVCALAAVAVLLSLVVYGVVRCDSPWAHFGSAILLGFLWIQSAYVGHDSGHYQVMTTRGYNKLAQLLAGNCLTGISIAWWKWTHNAHHL AVNSLDYDPDLQHIPVFAVSNRLFDSIRSVFYGRSLSFDPVARFLVSYQHWAFYPVMCVARVNLYLQTFILLLSPSRNVPDRALNIAGTMVFWTWFPFLV ACLPNWPERFMFVLTSFAVCSVQHVQFCLNHFPANHYMGPPGANDWFEKQTKGTVNISCPSWMDWFHGGLQFQLEHHLFPRLPRCQLRKVSPVVQDLCKK HNLPYRSYSFFEANVCTIKTLREVALQARDLANPVPKNLVWEAVHTHG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G46210		AtSLD2	sphingoid LCB desaturase 2, Fa...		Lus10036408 [exp]	0	1
AT2G46210		AtSLD2	sphingoid LCB desaturase 2, Fa...		Lus10041083 [exp]	1.0	0.9094
AT5G19980		GONST4	golgi nucleotide sugar transpo...		Lus10017759 [exp]	5.3	0.8323
AT2G40840		DPE2	disproportionating enzyme 2 (....		Lus10035408 [exp]	6.0	0.8229
AT1G75170			Sec14p-like phosphatidylinosit...		Lus10014312 [exp]	6.9	0.7982
AT5G19790	AP2_ERF	RAP2.11	related to AP2 11 (.1)		Lus10030430 [exp]	11.3	0.7442
AT5G48300		APS1, ADG1	ADP-GLUCOSE PYROPHOSPHORYLASE ...		Lus10016069 [exp]	20.0	0.8151
AT4G31050			Biotin/lipoate A/B protein lig...		Lus10025664 [exp]	22.0	0.7707
AT5G59770			Protein-tyrosine phosphatase-l...		Lus10040862 [exp]	23.0	0.7956
AT2G29760		OTP81	ORGANELLE TRANSCRIPT PROCESSIN...		Lus10040680 [exp]	23.2	0.8054
AT3G11945		PDS2, ATHST	PHYTOENE DESATURATION 2, homog...		Lus10016221 [exp]	25.1	0.8044

Compare expression of checked genes

Lus10036408 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.