Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G39780 268 / 4e-91 RNS2 ribonuclease 2 (.1.2) AT1G14220 88 / 1e-20 Ribonuclease T2 family protein (.1) AT2G02990 87 / 1e-20 RNS1, ATRNS1 ribonuclease 1 (.1) AT1G26820 81 / 3e-18 RNS3 ribonuclease 3 (.1) AT1G14210 62 / 2e-11 Ribonuclease T2 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041084 [exp] 213 / 5e-68 AT2G39780 306 / 2e-104 ribonuclease 2 (.1.2) Lus10012823 [exp] 87 / 4e-20 AT2G02990 334 / 2e-117 ribonuclease 1 (.1) Lus10027978 [exp] 86 / 1e-19 AT1G14220 330 / 4e-116 Ribonuclease T2 family protein (.1) Lus10030468 [exp] 85 / 1e-19 AT2G02990 341 / 3e-120 ribonuclease 1 (.1) Lus10003110 [exp] 64 / 5e-12 AT1G26820 142 / 4e-42 ribonuclease 3 (.1) Lus10035881 [exp] 64 / 6e-12 AT2G02990 130 / 4e-37 ribonuclease 1 (.1) Lus10035882 [exp] 64 / 7e-12 AT1G14220 128 / 1e-36 Ribonuclease T2 family protein (.1) Lus10022385 [exp] 60 / 3e-10 AT1G26820 92 / 2e-21 ribonuclease 3 (.1) Lus10015409 [exp] 57 / 1e-09 AT1G14220 79 / 8e-18 Ribonuclease T2 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G174400 [exp] 266 / 1e-89 AT2G39780 371 / 5e-131 ribonuclease 2 (.1.2) Potri.010G168700 [exp] 84 / 4e-19 AT2G02990 337 / 2e-118 ribonuclease 1 (.1) Potri.008G086700 [exp] 83 / 6e-19 AT2G02990 310 / 8e-108 ribonuclease 1 (.1) Potri.008G086800 [exp] 79 / 2e-17 AT1G26820 288 / 1e-99 ribonuclease 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00445 [flax] [poplar] Ribonuclease_T2 Ribonuclease T2 family
Representative CDS sequence Show only first row Show all	>Lus10036409 pacid=23174530 polypeptide=Lus10036409 locus=Lus10036409.g ID=Lus10036409.BGIv1.0 annot-version=v1.0 ATGGCTTCCTCCGTCTCCGTCAAAAGCACTATGCTCCTGCTGCTGCTCTCCATTCAGCTGTCTCTTTCTGTCTCCCTTCCCCGCTCTTCCTCTGGCGCGT TAGCTCAGCTGAAAGAGGAGGAAAACGATGTGGAGCTGGAGGAGCTGCAGGTGATGACCAATTCGAAACAGAGAGAATTCGATTACTTCATGCTCGCTCT CCAATGGCCGGCCACTTACTGCCGCTCCACAAAAAAATGCTGCTCTAAGAACGCTTGTTGCCGAGGGGAGAACTCTCCTACTGAATTTACTATCCATGGG TTATGGCCTGATTACAATGACGGCAGCTATCCTTCCTGCTGCGGCGGATCCAATTTTGATGAGAAAGAGCTCTCGACATTACTTGACCCTCTGAACAAGT ACTGGCCAACTCTGAGCTGTGGAAAATCATCCACCTGCCATGGGGTGAAAGGATCTTTCTGGGCACATGAGCAAGTACTATTTGAAGCTGGATATGTTCC TTCTGATACTGAGAAGTACCCCGTTGGAGGCATAATTTACGCTATTCAGAATGCCTACCTGGAAACCCCAATGCTCATCTGCTCCAAGGGGGCTCTGGAG GAAATCCGCTTATGCTTCTACAAAAATTTCAAGCCAAGGGACTGCACGACAGGGTCGACGCTGCGAGCTGGCAAGTATTCTTCGTCGAGTTCGTGTCCAG AATACGTTAGCTTGCCTGCCTCGTCCGGTAAATTCTTGTGCTATCTTTGTGGCCACACCAACACTGCTGATATATGTAGGTAA
AA sequence Show only first row Show all	>Lus10036409 pacid=23174530 polypeptide=Lus10036409 locus=Lus10036409.g ID=Lus10036409.BGIv1.0 annot-version=v1.0 MASSVSVKSTMLLLLLSIQLSLSVSLPRSSSGALAQLKEEENDVELEELQVMTNSKQREFDYFMLALQWPATYCRSTKKCCSKNACCRGENSPTEFTIHG LWPDYNDGSYPSCCGGSNFDEKELSTLLDPLNKYWPTLSCGKSSTCHGVKGSFWAHEQVLFEAGYVPSDTEKYPVGGIIYAIQNAYLETPMLICSKGALE EIRLCFYKNFKPRDCTTGSTLRAGKYSSSSSCPEYVSLPASSGKFLCYLCGHTNTADICR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G39780		RNS2	ribonuclease 2 (.1.2)		Lus10036409 [exp]	0	1
AT1G34110			Leucine-rich receptor-like pro...		Lus10000509 [exp]	16.6	0.8234
AT3G51870			Mitochondrial substrate carrie...		Lus10004820 [exp]	36.8	0.7910
AT5G36930			Disease resistance protein (TI...		Lus10035674 [exp]	37.5	0.7617
AT1G53390		ABCG24	ATP-binding cassette G24, P-lo...		Lus10038714 [exp]	81.9	0.7484
AT2G16940			Splicing factor, CC1-like (.1....		Lus10027830 [exp]	96.4	0.7177
					Lus10036102 [exp]	160.6	0.7162
AT1G04950		EMB2781, ATTAF6...	TBP-associated factor 6, EMBRY...		Lus10014628 [exp]	233.6	0.7142
AT1G09020		ATSNF4, SNF4	homolog of yeast sucrose nonfe...		Lus10031501 [exp]	263.0	0.7031

Compare expression of checked genes

Lus10036409 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.