Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G48340 420 / 8e-143 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041085 [exp] 676 / 0 AT5G48340 371 / 5e-125 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G174300 [exp] 468 / 3e-161 AT5G48340 419 / 5e-142 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03343 [flax] [poplar] SART-1 SART-1 family
Representative CDS sequence Show only first row Show all	>Lus10036410 pacid=23174540 polypeptide=Lus10036410 locus=Lus10036410.g ID=Lus10036410.BGIv1.0 annot-version=v1.0 ATGGTGAAATTGCTTCTAACGAAGCCGAATTCAGCCGGAGATTATGATGAAGACGGTGAAGTGAGCAAGAGGTGGATATCCCTCTTGAGCGAATTGAGTT CTGTTGTTTGGTCATTGATGACAGCTGCAGGTCGATCCGAAGCTCGTTTATGGCTTTGCAATACCATCGGAGGGCTAGAATCCCTAACTTCCTGCCAGCA ACGAGATATATTCATAAAACTATTGAGAGCAAATCCTAAACAACGAGGTTTAGCAATTCAGCTCTTGCAAATGATATTTGCCAAAAGGCCTCAGATGGCA GGCGCCATTGTAGCCAAAAGAAGCCATGTGCTCGATAAATTCTTTCAAGGAAATTCAGGGAGAGTATCGGATTGGTTTGCTAACTTTGCTGATGGTACTG GATTGGAGCATAAGAAGGGTGCCAAAGCTTTGTTTCAGTTTGCCTTTGTAAACCGGGACATCTGTTGGGAGGAGCTTGAGTGGAAAGGAAAGCATGGACA ATCACCTGCTGTGGTTGCAACGAAGCCCCATTACCTTCTTGACTTAGATGTACAGAGAACAGTGGAGAATTTCCTGGAATACGTTCCTGAATTTTGGTCA TCCAGTGAGTTTGCAGAGTCACTTAAAGATGGTGAGATTCTGCAAACTGATCCAGAGTTCTTCATAGAGTTCTTTATTGGGCTGATGTTCAAGGATGATT CAAGGGATGTATGGGAAATGGTGAGTGAGTTTCTTATGGAGGAGCCTTTCTCTTCTCTGTGTCAACACCTTCTCATAATTCTTGAAGAGAAGGAGCTTAT TACTTTCCTTGAGTTGCTTCATAGACGTCTGAAAGCCGGGTCGTCTTCTTGGCTTGAGATCGTGATTTCTGAACGATGTAGTGATTGGTCCATCGATCAG CTTCTTCTGCTAAACGGGATTGTAGATCATGGACGCCAGCTTCTGAGGCTTGTCCATGATGAGGACTCCGACAAGAGATTGGAGATCAAGGAAATTGCTT CGCAGGTGTGCAGAATCTCGAACAATGCCAGCACCTTGGCTCCTCTGCTAAAGGAATGCTCAAAGAGGAAAGCAAGAGAAGGAATCGAACTATTGGCGAT TCAGTCTTTCGTCATTCACTATTCATTATCAGAGGAGTGCAGGACCGCTGAGGCATGGGAATCTTTGTTTTCTGAGAATGGGGTAGCTTTCAGGAGAACT AACAAATACGCCCTGCTAGATGTGGATGGAGTTAAAGAAAGCGATTCGGAATTGAGCGGTGATGGAGTAATGAAGAGGAAGAAGAAGCACAAGAAGAAAA AGGACAAGAGAAAGAAGAGGAGAAGAGACATAGATGATGATGATGAGTTGGCGGAGTTCGGTGGCTCCAGTAATCGGATGAGTCCGAGTCGGCAAGCTAC TGGTGTTAGCTGGTTGCTATCTACGGACAACTTTTCGGCATCATGGACGACAGTTGATTTACCGGAGCACCTTTCGAGGTGGTGTTTCTCAACGTGGATG AAATTTGCATCTTTGAACAAGAGCCTTACCTGA
AA sequence Show only first row Show all	>Lus10036410 pacid=23174540 polypeptide=Lus10036410 locus=Lus10036410.g ID=Lus10036410.BGIv1.0 annot-version=v1.0 MVKLLLTKPNSAGDYDEDGEVSKRWISLLSELSSVVWSLMTAAGRSEARLWLCNTIGGLESLTSCQQRDIFIKLLRANPKQRGLAIQLLQMIFAKRPQMA GAIVAKRSHVLDKFFQGNSGRVSDWFANFADGTGLEHKKGAKALFQFAFVNRDICWEELEWKGKHGQSPAVVATKPHYLLDLDVQRTVENFLEYVPEFWS SSEFAESLKDGEILQTDPEFFIEFFIGLMFKDDSRDVWEMVSEFLMEEPFSSLCQHLLIILEEKELITFLELLHRRLKAGSSSWLEIVISERCSDWSIDQ LLLLNGIVDHGRQLLRLVHDEDSDKRLEIKEIASQVCRISNNASTLAPLLKECSKRKAREGIELLAIQSFVIHYSLSEECRTAEAWESLFSENGVAFRRT NKYALLDVDGVKESDSELSGDGVMKRKKKHKKKKDKRKKRRRDIDDDDELAEFGGSSNRMSPSRQATGVSWLLSTDNFSASWTTVDLPEHLSRWCFSTWM KFASLNKSLT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G48340			unknown protein		Lus10036410 [exp]	0	1
AT5G48340			unknown protein		Lus10041085 [exp]	2.0	0.9419
AT1G09220			Pentatricopeptide repeat (PPR)...		Lus10011341 [exp]	3.7	0.9206
AT1G05410			Protein of unknown function (D...		Lus10041201 [exp]	5.5	0.9350
AT5G29000	GARP	PHL1	PHR1-like 1, Homeodomain-like ...		Lus10008197 [exp]	6.7	0.9284
AT3G12300			unknown protein		Lus10005383 [exp]	7.2	0.9282
AT1G28560		SRD2	SHOOT REDIFFERENTIATION DEFECT...		Lus10041957 [exp]	9.2	0.9214
AT2G02760		ATUBC2	ubiquitin-conjugating enzyme 2...		Lus10013263 [exp]	13.2	0.9276
AT5G53220			unknown protein		Lus10001067 [exp]	14.1	0.9181
AT4G16520		ATG8F	autophagy 8f, Ubiquitin-like s...		Lus10008507 [exp]	14.8	0.9180
AT4G39952			Pentatricopeptide repeat (PPR)...		Lus10010688 [exp]	16.7	0.9072

Compare expression of checked genes

Lus10036410 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.