Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G12790 444 / 6e-156 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3.4.5) AT5G22370 173 / 5e-50 QQT1, EMB1705 QUATRE-QUART 1, EMBRYO DEFECTIVE 1705, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT4G21800 85 / 1e-17 QQT2 quatre-quart2, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT5G53890 52 / 1e-06 AtPSKR2 phytosylfokine-alpha receptor 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041086 [exp] 540 / 0 AT4G12790 435 / 9e-156 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3.4.5) Lus10018675 [exp] 191 / 1e-56 AT5G22370 493 / 9e-178 QUATRE-QUART 1, EMBRYO DEFECTIVE 1705, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10007747 [exp] 185 / 3e-55 AT5G22370 396 / 1e-140 QUATRE-QUART 1, EMBRYO DEFECTIVE 1705, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10009213 [exp] 99 / 2e-21 AT5G53890 1258 / 0.0 phytosylfokine-alpha receptor 2 (.1) Lus10005403 [exp] 96 / 1e-20 AT5G53890 1248 / 0.0 phytosylfokine-alpha receptor 2 (.1) Lus10019602 [exp] 86 / 8e-18 AT4G21800 545 / 0.0 quatre-quart2, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10040022 [exp] 86 / 1e-17 AT4G21800 542 / 0.0 quatre-quart2, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10016256 [exp] 62 / 3e-10 AT2G27660 107 / 8e-26 Cysteine/Histidine-rich C1 domain family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G174200 [exp] 484 / 4e-172 AT4G12790 432 / 5e-155 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3.4.5) Potri.014G015700 [exp] 188 / 9e-56 AT5G22370 462 / 6e-166 QUATRE-QUART 1, EMBRYO DEFECTIVE 1705, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.010G148000 [exp] 91 / 9e-20 AT4G21800 555 / 0.0 quatre-quart2, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.008G103000 [exp] 91 / 2e-19 AT4G21800 527 / 0.0 quatre-quart2, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.011G116900 [exp] 62 / 7e-10 AT5G53890 1279 / 0.0 phytosylfokine-alpha receptor 2 (.1) Potri.001G398500 [exp] 61 / 1e-09 AT5G53890 1268 / 0.0 phytosylfokine-alpha receptor 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF03029 [flax] [poplar] ATP_bind_1 Conserved hypothetical ATP binding protein
Representative CDS sequence Show only first row Show all	>Lus10036411 pacid=23174466 polypeptide=Lus10036411 locus=Lus10036411.g ID=Lus10036411.BGIv1.0 annot-version=v1.0 ATGTTAGGCAGCTTCAATAATGGGTCGCTGGTTGCTTCTTGGTCTGATGATACCAAGCGATGCAACTGGGATGGAGTTTCTTGTGCTATAAACAGCATCT CCAATGGCAGTAGAGTAACTATGCTGATTCTACCGAAGCATGGTCTTCAAGGGCTGATTCCTAAAGTCTTGCAAGCATGGTCGTCAATCTCGCCGGGGAA CGTGTCTGCAACGGCTGTAACTAAGGAATCACAGCATGGAAAGAACACTACATCTGCAAATCCTACCATTCATTCTCCCTCCACAAGCTCTGCTTCCACA TGCCCCAATCCACCGCCCACCCCGCTCACCCCGACTTCAAACTCACCCTCTCCGTCGCCGATCTCGGGATTCTACTACGACGTCAGGAACCGCTGCAACC AAAATCTCTGTTGTGGCAAGGAGAATCGCCAGATCTCGAGTTCGGGACACGAGATTCTGCACCTTCTTCAGTTGAGGCTCGGAATTGATCGAAAAATTGG GGCGGATTTGGAAGTGGAGATGAGTGTCGTGCAGGCTCGGTTTAAGAAAATCGGGTTGTGTCTCTTCGTTTCTTCCTCAACCGCCGCTCTCCCGCCCTCC GACGTACGGCATTCAAATCAGTTAGCACAGCTTCAAGACCAAAATTCCATCATGGGCTATGCACAGCTTGTCATTGGTCCCGCTGGCAGCGGGAAGTCCA CTTATTGCTCTAGCTTGCACAAACATTGTGAAACCATTGGCCGTTCCATTCATATTGTGAACCTAGATCCTGCAGCAGAAAACTTTGACTATCCTGTCGC TGTGGATATTAGAGAGCTCATTAATTTGGATGATGTCATGGAGGAACTTGGTCTGGGTCCGAATGGTGCTCTTATGTACTGCATGGATGAACTTGAGGAC AATCTGGATGATTGGTTAACAGAGGAGCTGGACAACTACATGGATGATGACTACCTAGTTTTTGATTGCCCAGGCCAGATAGAACTCTTTTCACATGTTC CGGTGCTTCGTAACTTTGTGCAACATTTGCAGCGGAAGAATTTCAATGTTTGTGTTGTATACTTGCTTGATTCACAGTTCATTACAGATGTGACCAAGTT CATTAGTGGCTGTATGGCATCCCTCTCTGCAATGGTCCAGCTTGAACTGCCCCATGTTAATATCCTCTCCAAAATGGACCTGGTGAAGAACAAACGGGAT CTCGAAGACTACCTCAGGCCAGAGCCTACAACTCTTTTGGCTGAGCTCAATCAACGCATGGGTCCTCAGTTCTTAAAGCTAAACAAAGCTTTGATTGAAC TGGTCGACAGCTACAGTATGGTCAGCTTTATGCCACTTGACTTGAGGAAAGAAAGCAGCATTCAGTATGTGCTGTCTCAAATTGATACCGCGATTCAATA TGGAGAAGATGCAGACGTGAAGATCAGAGATTTTGATGAGCCTGAAGACGATGACTCATGA
AA sequence Show only first row Show all	>Lus10036411 pacid=23174466 polypeptide=Lus10036411 locus=Lus10036411.g ID=Lus10036411.BGIv1.0 annot-version=v1.0 MLGSFNNGSLVASWSDDTKRCNWDGVSCAINSISNGSRVTMLILPKHGLQGLIPKVLQAWSSISPGNVSATAVTKESQHGKNTTSANPTIHSPSTSSAST CPNPPPTPLTPTSNSPSPSPISGFYYDVRNRCNQNLCCGKENRQISSSGHEILHLLQLRLGIDRKIGADLEVEMSVVQARFKKIGLCLFVSSSTAALPPS DVRHSNQLAQLQDQNSIMGYAQLVIGPAGSGKSTYCSSLHKHCETIGRSIHIVNLDPAAENFDYPVAVDIRELINLDDVMEELGLGPNGALMYCMDELED NLDDWLTEELDNYMDDDYLVFDCPGQIELFSHVPVLRNFVQHLQRKNFNVCVVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVKNKRD LEDYLRPEPTTLLAELNQRMGPQFLKLNKALIELVDSYSMVSFMPLDLRKESSIQYVLSQIDTAIQYGEDADVKIRDFDEPEDDDS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G12790			P-loop containing nucleoside t...		Lus10036411 [exp]	0	1
AT2G43320			S-adenosyl-L-methionine-depend...		Lus10015953 [exp]	1.0	0.9585
AT4G12790			P-loop containing nucleoside t...		Lus10041086 [exp]	1.4	0.9518
AT3G16565			alanine-tRNA ligases;nucleic a...		Lus10000503 [exp]	3.2	0.9321
AT1G72710		CKL2	casein kinase 1-like protein 2...		Lus10006018 [exp]	3.5	0.9392
AT2G19480		NFA2, NFA02, NA...	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Lus10037630 [exp]	3.5	0.9316
AT4G18270		ATTRANS11	ARABIDOPSIS THALIANA TRANSLOCA...		Lus10023316 [exp]	5.2	0.9247
AT1G79915			Putative methyltransferase fam...		Lus10035886 [exp]	5.7	0.9169
AT4G31180			Class II aminoacyl-tRNA and bi...		Lus10028555 [exp]	6.9	0.9254
AT1G24050			RNA-processing, Lsm domain (.1...		Lus10010705 [exp]	7.3	0.9135
AT2G39805			Integral membrane Yip1 family ...		Lus10004695 [exp]	7.7	0.9130

Compare expression of checked genes

Lus10036411 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.