Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07550 417 / 3e-145 RNI-like superfamily protein (.1.2) AT5G23340 128 / 3e-33 RNI-like superfamily protein (.1) AT4G15475 120 / 2e-29 F-box/RNI-like superfamily protein (.1) AT5G01720 93 / 2e-20 RNI-like superfamily protein (.1) AT3G58530 92 / 2e-20 RNI-like superfamily protein (.1) AT5G25350 92 / 4e-20 EBF2 EIN3-binding F box protein 2 (.1) AT5G27920 81 / 2e-16 F-box family protein (.1) AT2G25490 79 / 9e-16 FBL6, EBF1 EIN3-binding F box protein 1 (.1) AT1G47056 76 / 9e-15 VFB1 VIER F-box proteine 1 (.1) AT4G07400 75 / 2e-14 VFB3 VIER F-box proteine 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041087 [exp] 730 / 0 AT3G07550 417 / 2e-145 RNI-like superfamily protein (.1.2) Lus10013444 [exp] 127 / 4e-33 AT5G23340 591 / 0.0 RNI-like superfamily protein (.1) Lus10040998 [exp] 127 / 8e-33 AT5G23340 595 / 0.0 RNI-like superfamily protein (.1) Lus10012764 [exp] 109 / 8e-26 AT4G15475 813 / 0.0 F-box/RNI-like superfamily protein (.1) Lus10034013 [exp] 95 / 7e-21 AT2G20790 808 / 0.0 clathrin adaptor complexes medium subunit family protein (.1.2.3) Lus10001264 [exp] 92 / 7e-20 AT5G01720 781 / 0.0 RNI-like superfamily protein (.1) Lus10012214 [exp] 88 / 2e-18 AT5G01720 731 / 0.0 RNI-like superfamily protein (.1) Lus10018737 [exp] 84 / 2e-17 AT1G47056 638 / 0.0 VIER F-box proteine 1 (.1) Lus10011506 [exp] 83 / 5e-17 AT5G67250 566 / 0.0 VIER F-BOX PROTEINE 4, SKP1/ASK1-interacting protein 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G056400 [exp] 459 / 8e-162 AT3G07550 438 / 2e-153 RNI-like superfamily protein (.1.2) Potri.005G088800 [exp] 115 / 7e-29 AT5G23340 567 / 0.0 RNI-like superfamily protein (.1) Potri.006G105400 [exp] 95 / 5e-21 AT5G01720 712 / 0.0 RNI-like superfamily protein (.1) Potri.016G128400 [exp] 92 / 6e-20 AT5G01720 712 / 0.0 RNI-like superfamily protein (.1) Potri.006G195800 [exp] 86 / 2e-18 AT3G58530 477 / 9e-170 RNI-like superfamily protein (.1) Potri.019G123400 [exp] 86 / 4e-18 AT5G01720 604 / 0.0 RNI-like superfamily protein (.1) Potri.018G027700 [exp] 84 / 2e-17 AT2G25490 820 / 0.0 EIN3-binding F box protein 1 (.1) Potri.013G013100 [exp] 84 / 2e-17 AT5G27920 631 / 0.0 F-box family protein (.1) Potri.002G123100 [exp] 81 / 1e-16 AT1G47056 649 / 0.0 VIER F-box proteine 1 (.1) Potri.005G141800 [exp] 81 / 2e-16 AT5G67250 570 / 0.0 VIER F-BOX PROTEINE 4, SKP1/ASK1-interacting protein 2 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10036412 pacid=23174499 polypeptide=Lus10036412 locus=Lus10036412.g ID=Lus10036412.BGIv1.0 annot-version=v1.0 ATGAATCTGCCTGATGATTGCCTCTCCACGATCTTCCACAAGCTCGAATGCAGTTCCGATCGGGAGTCATTCGGGCTGACTTGCCACCGCTGGTTAAACA TCCAGAACACGAATCGAAAATCTCTGCAGTTCTCTTGCTCTTTCACCCTCGCCCACCGTTCCTCCTCCACCCTCCTAGTCAACAATTTCCATATCGACAT GCTACTCACTCGCTTCCAGTATTTGGAGCACCTTTCCTTATCCGGTTGCACCGAGCTTCTGGACTCTGATCTAAACCAGTTACAACTCCACGGTTCAAAC TTGCAAACGATCAATCTGGATGGGTGTTTCAAGATCACAGATTCTGGTCTTGAATTGATTGCCACCAGTTGCCCTTCCTTAGCAGCCATTAGTCTCTACA GATGCTACATTACTGACGAAGGTTTACGAACTCTAGGCAACCGGTGCCCTTCTCTAAAACGCGTAAACCTTGTGTATTGCCATCTTATCTCTGACGATGG TCTAAGAGCTATCTCCACTGGCTGCACTGAGCTTCAAGCAGTCAAGATCTCTTGGTGCAGGGGAGTGTATGGCACTGGATTCACCGGATGTCCGCCGACT TTATGTTACGTAGATGCTGAATACTGCAAGATTGGAACAGAAGGGATCGCAGGAATTGTCAGTGGAGGTGGAATTGAATACTTGAACATTTCGGGGTTGA GCTGGTCGGATAACCAAGCTGCATTAGCACCAATAGGATTGTTGGCTTCCAGACTCAAAATCCTGAACCTCAGGATGTGCAGGAACATTGGCGATGAGTC CATAACGGCAATAGCCAGAGGGTGCCATGTACTAGAGGAATGGAACTTGGCATTGTGCCATGAAGTTAAGGTTGCGGGATGGCAGTCGATCGGGGCCAGC TGCAACAGGCTCGAGAGACTTCACGTGAATCGATGTCGTAATTTGTGTGATCTGAGCTTGCAGGCATTGAGGGAAGGATGCAGGAGGCTTCAGATATTGT ACATTGGGCGTAGTGGCGTGTTCTCTCCCACTGCATTGGAAGTTTTCAGAATGCATAGGGGCAGTGTTGAGATTAGAGATGAAGAGGTCATGTGTATTGG CCCTGACTGGACCCTTAGATGA
AA sequence Show only first row Show all	>Lus10036412 pacid=23174499 polypeptide=Lus10036412 locus=Lus10036412.g ID=Lus10036412.BGIv1.0 annot-version=v1.0 MNLPDDCLSTIFHKLECSSDRESFGLTCHRWLNIQNTNRKSLQFSCSFTLAHRSSSTLLVNNFHIDMLLTRFQYLEHLSLSGCTELLDSDLNQLQLHGSN LQTINLDGCFKITDSGLELIATSCPSLAAISLYRCYITDEGLRTLGNRCPSLKRVNLVYCHLISDDGLRAISTGCTELQAVKISWCRGVYGTGFTGCPPT LCYVDAEYCKIGTEGIAGIVSGGGIEYLNISGLSWSDNQAALAPIGLLASRLKILNLRMCRNIGDESITAIARGCHVLEEWNLALCHEVKVAGWQSIGAS CNRLERLHVNRCRNLCDLSLQALREGCRRLQILYIGRSGVFSPTALEVFRMHRGSVEIRDEEVMCIGPDWTLR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G07550			RNI-like superfamily protein (...		Lus10036412 [exp]	0	1
AT2G35060		KUP11	K+ uptake permease 11, K+ upta...		Lus10018324 [exp]	2.0	0.8954
AT5G24870			RING/U-box superfamily protein...		Lus10026941 [exp]	11.3	0.8992
AT5G54080		HGO	"homogentisate 1,2-dioxygenase...		Lus10028135 [exp]	13.8	0.8876
AT5G04760	MYB		Duplicated homeodomain-like su...		Lus10036413 [exp]	17.8	0.8877
AT4G13980	HSF	AT-HSFA5	HEAT SHOCK TRANSCRIPTION FACTO...		Lus10022546 [exp]	19.7	0.8643
AT5G04760	MYB		Duplicated homeodomain-like su...		Lus10041088 [exp]	25.1	0.8877
AT4G35470		PIRL4, DREB1C	plant intracellular ras group-...		Lus10004558 [exp]	28.9	0.8439
AT4G32480			Protein of unknown function (D...		Lus10017723 [exp]	31.0	0.8514
AT2G01690			ARM repeat superfamily protein...		Lus10034578 [exp]	33.3	0.8797
AT4G24740		AME1, AFC2	FUS3-complementing gene 2 (.1....		Lus10043309 [exp]	40.9	0.8826

Compare expression of checked genes

Lus10036412 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.