Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07660 496 / 6e-163 Kinase-related protein of unknown function (DUF1296) (.1) AT3G13990 137 / 5e-33 Kinase-related protein of unknown function (DUF1296) (.1), Kinase-related protein of unknown function (DUF1296) (.2) AT3G13222 102 / 3e-22 GIP1 GBF-interacting protein 1 (.1) AT1G55820 89 / 6e-18 Kinase-related protein of unknown function (DUF1296) (.1) AT4G18150 72 / 9e-13 Kinase-related protein of unknown function (DUF1296) (.1) AT5G46380 66 / 7e-11 Kinase-related protein of unknown function (DUF1296) (.1) AT1G29370 65 / 2e-10 Kinase-related protein of unknown function (DUF1296) (.1) AT1G29350 65 / 2e-10 Kinase-related protein of unknown function (DUF1296) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041089 [exp] 1454 / 0 AT3G07660 662 / 0.0 Kinase-related protein of unknown function (DUF1296) (.1) Lus10037658 [exp] 99 / 6e-21 AT3G13990 560 / 0.0 Kinase-related protein of unknown function (DUF1296) (.1), Kinase-related protein of unknown function (DUF1296) (.2) Lus10015640 [exp] 86 / 1e-16 AT3G13990 561 / 0.0 Kinase-related protein of unknown function (DUF1296) (.1), Kinase-related protein of unknown function (DUF1296) (.2) Lus10004604 [exp] 79 / 1e-14 AT1G29370 644 / 0.0 Kinase-related protein of unknown function (DUF1296) (.1) Lus10025382 [exp] 76 / 6e-14 AT1G29350 513 / 4e-171 Kinase-related protein of unknown function (DUF1296) (.1) Lus10004543 [exp] 71 / 4e-12 AT1G29370 641 / 0.0 Kinase-related protein of unknown function (DUF1296) (.1) Lus10007338 [exp] 54 / 7e-09 AT1G29370 71 / 1e-15 Kinase-related protein of unknown function (DUF1296) (.1) Lus10020762 [exp] 56 / 2e-07 AT1G29370 70 / 4e-12 Kinase-related protein of unknown function (DUF1296) (.1) Lus10015262 [exp] 52 / 2e-06 AT1G29370 574 / 0.0 Kinase-related protein of unknown function (DUF1296) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G169900 [exp] 930 / 0 AT3G07660 491 / 1e-160 Kinase-related protein of unknown function (DUF1296) (.1) Potri.002G217000 [exp] 929 / 0 AT3G07660 600 / 0.0 Kinase-related protein of unknown function (DUF1296) (.1) Potri.011G079800 [exp] 196 / 2e-52 AT3G07660 125 / 2e-29 Kinase-related protein of unknown function (DUF1296) (.1) Potri.001G370900 [exp] 187 / 2e-49 AT3G07660 124 / 3e-29 Kinase-related protein of unknown function (DUF1296) (.1) Potri.003G063300 [exp] 164 / 1e-41 AT3G13990 619 / 0.0 Kinase-related protein of unknown function (DUF1296) (.1), Kinase-related protein of unknown function (DUF1296) (.2) Potri.001G170700 [exp] 155 / 8e-39 AT3G13990 557 / 0.0 Kinase-related protein of unknown function (DUF1296) (.1), Kinase-related protein of unknown function (DUF1296) (.2) Potri.011G078800 [exp] 85 / 1e-16 AT1G29350 650 / 0.0 Kinase-related protein of unknown function (DUF1296) (.1) Potri.001G353100 [exp] 83 / 4e-16 AT1G29350 649 / 0.0 Kinase-related protein of unknown function (DUF1296) (.1) Potri.002G059300 [exp] 67 / 5e-11 AT1G29350 172 / 3e-44 Kinase-related protein of unknown function (DUF1296) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0214 [flax] [poplar] UBA PF06972 [flax] [poplar] DUF1296 Protein of unknown function (DUF1296)
Representative CDS sequence Show only first row Show all	>Lus10036414 pacid=23174681 polypeptide=Lus10036414 locus=Lus10036414.g ID=Lus10036414.BGIv1.0 annot-version=v1.0 ATGAGTAGTGGCGTAGCTGGTGATAGGGTTAGGGTTTCAATCCCAGGCAACGTCCGTAAGACGATCCAGAACATCAAGGAGATAACCGGAAATCACAGTG ACGAAGAAATTTACGCAATGCTCAAGGAGTGTTCCATGGATCCCAACGAAACCACCCAGAAGCTCCTCCTTCTTGATCCATTTCATGAAGTTAAAAGGAA GCGTGACAAAAAGAAAGAGAATGTTAACAATAAAGAGGCTGGAGATTCTCGGTGGAGATCTGGTACTCATGGGCGGGGAAGTAGGGGTGGTCGGATGAAC TTTTATCCTCGTTACTCCACTCATGATGGAGGTAATGGCCGAGCTTCTGCTCCTGGAAGGGAAAGCAGTACCAATCAACCTACAGAAAAAGGTGTTGGCT CATCGGTACCCACTCCCCAGGAAAAAGTTCAAGAAACAGCTGCCCCAGAAAGCACTGTCGCTGTTGTGGCTAATGGTCCTATTGGTGTAGCTTCTGGCGC TACTGGTGAACTAGCAGATTCTATAACTGCTGATAAAACCCTTGTAGTTGCACATGGAACTGCCGACACACTTGGAGAGCCTGTGCCAAACAGTAACAGC TCATCAGTGTCAGTGAATGCAGTGTCTTCAGCAACTGTCTGTTTCTCATCTTCGGATCCTGTACTAGTGCCATCTAATGATTCAAGGGTTGCTGGTACAG TGGGTACAATCAAGTGTGAAGTGCCGAACCATAGAGTTCTAGGTGACGCAGATGCTGTTCCTAATCCTGAGAAACCAGCTTCAGCAGTTTCAGGGAAGAA TGTAAACAAATCCCATGTTATTGGAAAGGGCCAATTCAGTGACTCTTCCCAACCCTCATCTGTATCAGTTAATGCTGTCTCTTCTGGTAGTAGGCCATCC TCTAATTATGGTAGCAGGGCACAACAAGCGATTGGTCCTCAAAAAGCTGGTGCTACTAAGGAGTGGATACCAAAGCCAACAAACCCCAACATAGCTCAGG TGTCTAGCACAACTAGTTTGCCGGAGGTGCCTAGTGTGCCAGTTAAAACTGTTCCTCAGTCACAACTGATGCCAGGAGGTGATAAGGATGCTCCAGCTTC CAATTCGATCAAGTTGAAGGAGTTGAATCTTCCACAACGACAGCATGTTATTATTCCCAACCACATCCATGTTCCAGAATCAGAGAGAACGAAATTGAGT TTTGGAAGTTTTGATACTAGCTTTGGAGTAGCTAAAAGCTATGCCAGTGGACAAGAGAGTGAAAAAGGTTCCACTCCTTTGTCTGAAGCAACACAAAGCG TTGAGGAAGTCGTGGATGAGCCAACAGCATGCAGTCAAGATACAGTTGCAGTTGCTGAGGAGGGAGCTTATCCTGATCAGCCCCATTCGCCGTCTCCTGT ACCAGAAAATTTGCAGAGTGATGATGATGTTTCTGTCAGTGCAGCACCTGATTACAGTGAGGGCAAACAAGACAACGTGGTGTCTGCTGGTCATCCATAC CCTGGAGTCCATTCTCCGCCAAGCTATTTTGGAATTGTGCATCCTGTACTAGGGGGCCAGATTGCACAATTTGAAAACTCAGAATCCCAACCACGTGATG CGTCTCGTATGCCTAGCTTTGTGGTTCAACAGCCATTTGATCCTGCAAGTTACTATGCACAATTCTATCGTCCTGGCACTGATAATGATGGCCGTGTTTC TCCTTTTCCTTCCCCTGGAGTTGCAGCCAAGTATAATGGGAATGTTGCAGTGTTACCTCCCCATACTTCTCAGTCTACTCGAGAGGGCTCAAACTCGTTG GTCCTGTCCACAGCAGGTCCTACAGCCCTGGCGACACAAGCTGCTGGGTTAATGCAGAGTTCTATTTCTGCAACTCAACAGCCATTACCTGTCTTCCGTC CACCAACTGGGTTGCATATGGCCCACTATCCACCAAACTACATTCCATATGGGCACTACTTCTCCCCATTCTACGGCCCACCACCAGGCATCCATCAGTT CTTAAGCAATGGTGCATTCCCTCAGCAACCCCAAGCAGGCAACATATTTCCAGCTCCACCTGCTGCAGCTGCGGCAGGTGTCAAATTCTCCGTGCCACAG TTCAAAGCCGGGACTAATGTGGGAAACTCTACTCACATTGGAATGCCAAGTGGCTATGGGCCGTATGCTTCGTCGCCAGCCGGTTATAATCCCAGTTCTG CAGGTGCTGGGGTCAATTCAACCACAAATGAGGATCTTGGTGCATCCCAGTTGAAGGAAAACGTCTATATTTCTGGGCAGCAGAGTGAGGGTTCTGCTGT GTGGATTGCTGCTCCTGGCCGCGATATCCCTACGATGCCAGCAAGTTCATTCTACAACCTTCCTCCTCAGGGTCAGCACGTAGCTTTCGCCCCGCAACAG GCTGGCCATGGGCCTTTTGCGGGTATCTATCACCCAGCTCAAGCAGTATCTGCTGCAGGAGTCCATCAACTTCTACAACAGTCTCAAGCAATGGGTGGTG CGGTTGACATGGCGGGACCTGCTGCAAGTGTTTATCAGCAGCAGCCTCAGCATCAACAGGTGAACTGGCCGCCAAGTAACTTTTGA
AA sequence Show only first row Show all	>Lus10036414 pacid=23174681 polypeptide=Lus10036414 locus=Lus10036414.g ID=Lus10036414.BGIv1.0 annot-version=v1.0 MSSGVAGDRVRVSIPGNVRKTIQNIKEITGNHSDEEIYAMLKECSMDPNETTQKLLLLDPFHEVKRKRDKKKENVNNKEAGDSRWRSGTHGRGSRGGRMN FYPRYSTHDGGNGRASAPGRESSTNQPTEKGVGSSVPTPQEKVQETAAPESTVAVVANGPIGVASGATGELADSITADKTLVVAHGTADTLGEPVPNSNS SSVSVNAVSSATVCFSSSDPVLVPSNDSRVAGTVGTIKCEVPNHRVLGDADAVPNPEKPASAVSGKNVNKSHVIGKGQFSDSSQPSSVSVNAVSSGSRPS SNYGSRAQQAIGPQKAGATKEWIPKPTNPNIAQVSSTTSLPEVPSVPVKTVPQSQLMPGGDKDAPASNSIKLKELNLPQRQHVIIPNHIHVPESERTKLS FGSFDTSFGVAKSYASGQESEKGSTPLSEATQSVEEVVDEPTACSQDTVAVAEEGAYPDQPHSPSPVPENLQSDDDVSVSAAPDYSEGKQDNVVSAGHPY PGVHSPPSYFGIVHPVLGGQIAQFENSESQPRDASRMPSFVVQQPFDPASYYAQFYRPGTDNDGRVSPFPSPGVAAKYNGNVAVLPPHTSQSTREGSNSL VLSTAGPTALATQAAGLMQSSISATQQPLPVFRPPTGLHMAHYPPNYIPYGHYFSPFYGPPPGIHQFLSNGAFPQQPQAGNIFPAPPAAAAAGVKFSVPQ FKAGTNVGNSTHIGMPSGYGPYASSPAGYNPSSAGAGVNSTTNEDLGASQLKENVYISGQQSEGSAVWIAAPGRDIPTMPASSFYNLPPQGQHVAFAPQQ AGHGPFAGIYHPAQAVSAAGVHQLLQQSQAMGGAVDMAGPAASVYQQQPQHQQVNWPPSNF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G07660			Kinase-related protein of unkn...		Lus10036414 [exp]	0	1
AT3G07660			Kinase-related protein of unkn...		Lus10041089 [exp]	1.0	0.9773
AT4G16180			unknown protein		Lus10017062 [exp]	1.4	0.9537
AT4G35890			winged-helix DNA-binding trans...		Lus10025951 [exp]	2.4	0.9349
AT2G30110		ATUBA1, MOS5	MODIFIER OF SNC1 5, ubiquitin-...		Lus10012507 [exp]	5.5	0.9249
AT1G09620			ATP binding;leucine-tRNA ligas...		Lus10024704 [exp]	5.9	0.9311
AT2G27460			sec23/sec24 transport family p...		Lus10020622 [exp]	6.3	0.9145
AT4G24290			MAC/Perforin domain-containing...		Lus10000175 [exp]	6.3	0.8867
AT4G23460			Adaptin family protein (.1)		Lus10028775 [exp]	6.5	0.9041
AT4G11420		ATTIF3A1, ATEIF...	eukaryotic translation initiat...		Lus10015204 [exp]	10.0	0.9338
AT3G15880		WSIP2, TPR4	TOPLESS-RELATED 4, WUS-interac...		Lus10043258 [exp]	11.8	0.9021

Compare expression of checked genes

Lus10036414 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.