Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G04280 832 / 0 unknown protein AT4G12700 818 / 0 unknown protein AT4G08810 486 / 2e-161 SUB1 calcium ion binding (.1) AT4G12710 367 / 5e-118 ARM repeat superfamily protein (.1) AT3G03440 177 / 4e-48 ARM repeat superfamily protein (.1) AT5G14510 155 / 2e-41 ARM repeat superfamily protein (.1) AT3G01400 140 / 7e-36 ARM repeat superfamily protein (.1) AT3G54790 135 / 3e-32 ARM repeat superfamily protein (.1.2) AT2G23140 132 / 2e-31 RING/U-box superfamily protein with ARM repeat domain (.1.2) AT5G58680 123 / 3e-30 ARM repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041091 [exp] 946 / 0 AT2G04280 745 / 0.0 unknown protein Lus10041090 [exp] 630 / 0 AT4G12710 411 / 5e-143 ARM repeat superfamily protein (.1) Lus10039176 [exp] 512 / 2e-171 AT4G08810 845 / 0.0 calcium ion binding (.1) Lus10013761 [exp] 511 / 4e-171 AT4G08810 836 / 0.0 calcium ion binding (.1) Lus10039175 [exp] 347 / 3e-112 AT4G08810 463 / 5e-163 calcium ion binding (.1) Lus10033593 [exp] 220 / 2e-62 AT3G03440 395 / 4e-135 ARM repeat superfamily protein (.1) Lus10017635 [exp] 207 / 7e-59 AT3G03440 409 / 2e-141 ARM repeat superfamily protein (.1) Lus10002521 [exp] 177 / 6e-49 AT5G14510 281 / 1e-93 ARM repeat superfamily protein (.1) Lus10022275 [exp] 165 / 2e-44 AT5G14510 290 / 1e-96 ARM repeat superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G170200 [exp] 925 / 0 AT2G04280 862 / 0.0 unknown protein Potri.001G005500 [exp] 507 / 2e-169 AT4G08810 762 / 0.0 calcium ion binding (.1) Potri.014G170100 [exp] 476 / 3e-160 AT4G12710 422 / 3e-147 ARM repeat superfamily protein (.1) Potri.003G219200 [exp] 258 / 9e-77 AT4G08810 451 / 1e-155 calcium ion binding (.1) Potri.017G128100 [exp] 233 / 2e-68 AT3G03440 380 / 2e-130 ARM repeat superfamily protein (.1) Potri.004G088800 [exp] 231 / 1e-67 AT3G03440 389 / 7e-134 ARM repeat superfamily protein (.1) Potri.001G344200 [exp] 181 / 2e-50 AT5G14510 310 / 5e-105 ARM repeat superfamily protein (.1) Potri.005G225400 [exp] 147 / 6e-36 AT3G54790 736 / 0.0 ARM repeat superfamily protein (.1.2) Potri.002G037700 [exp] 144 / 4e-35 AT3G54790 707 / 0.0 ARM repeat superfamily protein (.1.2) Potri.014G016400 [exp] 131 / 7e-33 AT3G01400 557 / 0.0 ARM repeat superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10036415 pacid=23174395 polypeptide=Lus10036415 locus=Lus10036415.g ID=Lus10036415.BGIv1.0 annot-version=v1.0 ATGGTACATGAAGAGGAAGACGACACGTCGGCGGAACCTCCGGCCATCAGAGACCAAGAACAAGAAGCTTGGAATCTTCGCAAGGATTCACTCATCCTCG CACTCGCCAACAACCTTATCACCGGAGATCTCTCCTCCCAGATACAAGCTGCTCGCGACATCCGTAAGCTCGTCAGAAAATCCTCCTCTCCTAAAACTCG CTCCAAAATCGCCGCCGCCGGAGTTATCCCCCCCTTGATTCTCATGCTCCTCTCCCACAATCTCGACGCTTGCGAGGCTTCTCTCCTCGCTCTCCTCAAT CTCGCCGTGAGAAACGAGAGGAACAAGGTCAGCATAGTAACAGCAGGTGCCATCCCTCCTCTAGTGGAAATTCTCAAGTTTCAAAGTGACAGCTTAAGGG AACTTGCAACAGCTGCAGTTTTAACACTCTCAGCTGCTGAACCCAACAAGGCAGTCATTGCAGATTCAGGAGCTTCACGGTTTCTAATTCAAATACTTAG TTTGGGGACCGTTCAAGGGAAAGTCGATGCTGTAACAGCACTTCACAATCTCTCTACCTGCACTGAGAATGGGCATCAAATACTTGACGCGAAAGCAGTC CCCCCTCTCATTAGCCTCCTTAAAGAATGCAAGAAGTATTCAAAGTTTGCCGAGAAAGTAACTGCACTTCTGGAAATACTTGCCAACTGCGAAGAAGGGC GAATCGCTATAACAAATTCAGACGGTGGGATTCTAACTATAGTAGAGACAGTTGAAGATGGATCCCTTTCAAGTACAGAACACGCAGTTGGTGCGTTGCT TTCCTTGTGCCAAAGTAGCCGAGATAAGTACAGGGTACTGATTCTCAACGAAGGTGCCATACCTGGCCTTCTGCGCCTTACAGCTGAAGGCACCACGAAA GCTCAAGAAAGAGCTCGGACACTTCTTGACTTGCTCAGAGACACCCCCGAGGAGAAGAGATTAGCATCGTCTGTTATGAAAAAAATCGTGTACAATATCG CTGAAAGGGTTGACGGAGCGGATAAGGCTGCTGAAACAGCCAAGAAATTACTGGAGGACATGGTTCAAAGAAGCAAGGAGCTAAGCATAGACAGCCGTTT CCACTTGTACAGTGCAGTGACGGACAAGGAAAGTTCAGATCAAATAAATTCCTACGGGGCCACGTTTCCTGAGTTCCCTTACGTGGCAGCATCACAGGGT CTCAGCACAATCAACGGCGTTCAATTAATGTCCTTGTTGACTTCACCTTCTTCATCGGATCACTTGCTATTTTTGAGCTTTGTGGGTCTGGAGGTAAAAG GAATCATGATGGGTCGACATGGACTGTCTCGAGCAGCTGGAGGCTTCAGAGCAGAAAATTTAGGGCAGAATGCTTTAGCTTTGATTGGCAATCTCTGCTT CACTTTCTTTGTATTAGGGGTCTTGATTTTCACCATCATTGCTGCCACTTATGAACCTGAGGACCCTCTCTTCCATCCATCATCAACAAAGATGTCAAAC TTCCTCACTTCACAATCCAACGCCACTTTCAAACCGGATGCGTCGGTGGTCAGAACCGGCGAGGATTTCATGTTAGCTAACCAGAAAGTTTTCAACACTT TCATTAACATAAGCGATGTGGTGGTTCCTAAGATTGATGAAGAAGGTGGTGGTACTGTCATCAATGGTGAGGTGGAAGTCAAGACTGAGAGCTGTGACGG GCCTATAGACTGCAGGGATCCAGAGGTGTTCCATTTGTTGATGAAGAAGGCAATTGAGCAGTTTAAAGACATTCACTTCTACAGATTTGTTAAAGCTGCT TCTTTTAATAAAGATTACAGGCGGTTTACGATAGATCGATCGGAGTACTGTACTTTTAGTGTTGTGGGGATTGGGGATTATCATACTGGTGTGAATGCCA GGAAGAGGAAGAAGCGTTCGAAACCCGGTTTCGAGAAGAAACCCGCTGACTCTTCCACATTGTCGTTGCCTGTGGTGGGGGATACTGTGAATGATGCACT TCCTGTAGTGGAGTCCGAGAATTCGTTCAGTAAAGGGAAGTACTTGATCTATAACGGCGGTGGTGATCGATGCAAGGATATGAATCATTACCTGTGGAGT TTCTTGTGTGCATTGGGCGAGGCGCAGTACTTGAATCGTACTCTGGTTATGGATTTGACCATCTGTTTGAACTCGATGTATACTTCTTCGAACCAGGACG AGGAAGGGAAAGACTTCAGGTTTTACTTTGATTTCGAGCATTTAAACGAGGCGGCTTCTGTTCTTGACCAGGCTCAGTTTTGGGATGATTGGGGTAAGTG GCATAAACAGGATCGGTTAAGTCTTCATCTCGTTGAGGATCATAAGGTCACTCCTATGAAGCTTGCAGCAGAAGTTACAGACACTTTAATCATGAGGAAG TTTGGGTCTGTCGAGCCGGATAATTACTGGTACAGAGTGTGTGAGGGGGAAACCGAGTCGGTTATTCAGCGTCCGTGGCATTTGGTTTGGAAATCCAGAA GGTTGATGGATATTGTGTCGGCGATTTCTTCGAAACTGAACTGGGATTACGATGCGGTTCACATCGAAAGAGGGGAGAAAGCAAGGAACTCGGAGCTATG GCCGAATCTCGCAGCTGATACTTCTCCCAATGCGCTTCTTTCGACGTTGGCTGATAAAGTCGAAGAAGGTAGGCAACTGTACATTGCGACGAACGAACCG GATGCTTCGTTTTTTGACCCGTTGAAAGACAAGTACTCTACGCATTTCCTCGACGAGTACAAGGAACTTTGGGATGAGAACAGTGAGTGGTACTCGGAGA CGACGAAGCTGAATAGAGGGGTTCCGGTTGAGTTTGATGGCTACATGAGGGTCTCTGTGGACACAGAAGTTTTTCTTAGAGGTAAGAAGCAGATTGAGAC GTTCAACGATCTGACGAATGACTGCAAAGATGGCGTCAACACTTGCAACGCAGCAGCAAGTTGA
AA sequence Show only first row Show all	>Lus10036415 pacid=23174395 polypeptide=Lus10036415 locus=Lus10036415.g ID=Lus10036415.BGIv1.0 annot-version=v1.0 MVHEEEDDTSAEPPAIRDQEQEAWNLRKDSLILALANNLITGDLSSQIQAARDIRKLVRKSSSPKTRSKIAAAGVIPPLILMLLSHNLDACEASLLALLN LAVRNERNKVSIVTAGAIPPLVEILKFQSDSLRELATAAVLTLSAAEPNKAVIADSGASRFLIQILSLGTVQGKVDAVTALHNLSTCTENGHQILDAKAV PPLISLLKECKKYSKFAEKVTALLEILANCEEGRIAITNSDGGILTIVETVEDGSLSSTEHAVGALLSLCQSSRDKYRVLILNEGAIPGLLRLTAEGTTK AQERARTLLDLLRDTPEEKRLASSVMKKIVYNIAERVDGADKAAETAKKLLEDMVQRSKELSIDSRFHLYSAVTDKESSDQINSYGATFPEFPYVAASQG LSTINGVQLMSLLTSPSSSDHLLFLSFVGLEVKGIMMGRHGLSRAAGGFRAENLGQNALALIGNLCFTFFVLGVLIFTIIAATYEPEDPLFHPSSTKMSN FLTSQSNATFKPDASVVRTGEDFMLANQKVFNTFINISDVVVPKIDEEGGGTVINGEVEVKTESCDGPIDCRDPEVFHLLMKKAIEQFKDIHFYRFVKAA SFNKDYRRFTIDRSEYCTFSVVGIGDYHTGVNARKRKKRSKPGFEKKPADSSTLSLPVVGDTVNDALPVVESENSFSKGKYLIYNGGGDRCKDMNHYLWS FLCALGEAQYLNRTLVMDLTICLNSMYTSSNQDEEGKDFRFYFDFEHLNEAASVLDQAQFWDDWGKWHKQDRLSLHLVEDHKVTPMKLAAEVTDTLIMRK FGSVEPDNYWYRVCEGETESVIQRPWHLVWKSRRLMDIVSAISSKLNWDYDAVHIERGEKARNSELWPNLAADTSPNALLSTLADKVEEGRQLYIATNEP DASFFDPLKDKYSTHFLDEYKELWDENSEWYSETTKLNRGVPVEFDGYMRVSVDTEVFLRGKKQIETFNDLTNDCKDGVNTCNAAAS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G04280			unknown protein		Lus10036415 [exp]	0	1
AT2G04280			unknown protein		Lus10041091 [exp]	1.0	0.9633
AT2G20690			lumazine-binding family protei...		Lus10017000 [exp]	2.4	0.8976
AT5G27440			unknown protein		Lus10041604 [exp]	5.2	0.8054
AT2G36870		XTH32	xyloglucan endotransglucosylas...		Lus10026535 [exp]	8.7	0.8270
AT2G16600		ROC3	rotamase CYP 3 (.1.2)		Lus10007579 [exp]	9.9	0.8715
AT1G05070			Protein of unknown function (D...		Lus10035288 [exp]	11.0	0.8108
AT4G28230			unknown protein		Lus10031619 [exp]	11.1	0.8565
AT3G25230		ROF1, ATFKBP62	FK506 BINDING PROTEIN 62, rota...		Lus10038216 [exp]	12.2	0.8510
AT4G14660		NRPE7	RNA polymerase Rpb7-like, N-te...		Lus10023619 [exp]	12.8	0.7905
AT4G24190		AtHsp90-7, HSP9...	SHEPHERD, HEAT SHOCK PROTEIN 9...		Lus10033135 [exp]	15.5	0.8443

Compare expression of checked genes

Lus10036415 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.