Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G20590 80 / 3e-19 Cyclin family protein (.1) AT1G20610 78 / 1e-17 CYCB2;3 Cyclin B2;3 (.1) AT2G17620 76 / 7e-17 CYCB2;1 Cyclin B2;1 (.1) AT1G76310 76 / 7e-17 CYCB2;4 CYCLIN B2;4 (.1) AT4G35620 74 / 3e-16 CYCB2;2 Cyclin B2;2 (.1) AT1G16330 58 / 2e-10 CYCB3;1 cyclin b3;1 (.1) AT3G11520 47 / 9e-07 CYC2, CYCB1;3 CYCLIN 2, CYCLIN B1;3 (.1) AT5G06150 45 / 2e-06 CYC1BAT, CYCB1;2 cyclin B 1;2, Cyclin family protein (.1) AT1G77390 44 / 1e-05 TAM, DYP, CYCA1;2 TARDY ASYNCHRONOUS MEIOSIS, CYCLIN A1;2 (.1) AT5G11300 41 / 9e-05 CYC2BAT, CYCA2;2, CYC3B CYCLIN A2;2, mitotic-like cyclin 3B from Arabidopsis (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016015 [exp] 117 / 8e-32 AT1G76310 559 / 0.0 CYCLIN B2;4 (.1) Lus10012261 [exp] 113 / 3e-30 AT1G76310 501 / 8e-176 CYCLIN B2;4 (.1) Lus10030746 [exp] 80 / 3e-18 AT1G76310 526 / 0.0 CYCLIN B2;4 (.1) Lus10013226 [exp] 79 / 5e-18 AT1G76310 514 / 0.0 CYCLIN B2;4 (.1) Lus10041092 [exp] 71 / 4e-16 AT4G35620 169 / 2e-52 Cyclin B2;2 (.1) Lus10009596 [exp] 50 / 6e-08 AT1G16340 376 / 3e-128 Aldolase superfamily protein (.1.2.3.4) Lus10001765 [exp] 50 / 8e-08 AT1G79500 499 / 2e-172 Aldolase-type TIM barrel family protein (.1.2.3.4.5) Lus10026803 [exp] 49 / 2e-07 AT2G26760 401 / 2e-138 Cyclin B1;4 (.1) Lus10036080 [exp] 49 / 3e-07 AT2G26760 405 / 2e-140 Cyclin B1;4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G010000 [exp] 96 / 4e-24 AT1G76310 550 / 0.0 CYCLIN B2;4 (.1) Potri.005G251400 [exp] 90 / 6e-22 AT1G76310 539 / 0.0 CYCLIN B2;4 (.1) Potri.005G100000 [exp] 89 / 2e-21 AT2G17620 459 / 1e-160 Cyclin B2;1 (.1) Potri.009G165800 [exp] 88 / 2e-21 AT1G76310 488 / 2e-172 CYCLIN B2;4 (.1) Potri.010G173200 [exp] 51 / 3e-08 AT1G16330 477 / 1e-160 cyclin b3;1 (.1) Potri.008G083200 [exp] 49 / 2e-07 AT1G16330 497 / 1e-168 cyclin b3;1 (.1) Potri.001G272000 [exp] 47 / 8e-07 AT2G26760 434 / 1e-151 Cyclin B1;4 (.1) Potri.009G066600 [exp] 43 / 2e-05 AT2G26760 430 / 5e-150 Cyclin B1;4 (.1) Potri.018G034100 [exp] 43 / 3e-05 AT5G11300 498 / 1e-174 CYCLIN A2;2, mitotic-like cyclin 3B from Arabidopsis (.1) Potri.006G247200 [exp] 42 / 4e-05 AT5G11300 494 / 3e-173 CYCLIN A2;2, mitotic-like cyclin 3B from Arabidopsis (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0065 [flax] [poplar] Cyclin PF02984 [flax] [poplar] Cyclin_C Cyclin, C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10036416 pacid=23174370 polypeptide=Lus10036416 locus=Lus10036416.g ID=Lus10036416.BGIv1.0 annot-version=v1.0 ATGCAGATACTATTTCTTCCTCTTCCCCACTTGAATTTCTTGGACCTCTTCTTCCCAACCGTCAGATCACATCAAGTCAATCTCCACCATAAGGCTCTTG CACGCCTTCAAAGATTCTTAAGCGTCCGTGCGAGTGTCAACGAGTCACAAGACTGTCCAATCACCGATGCAGAAGATTTCTCTGCACCAATGTTTGTGCA GCATACAGAACTGGAGCTTCTGTCATTCTTTCTGATAGCGCTGTGCTTAGTTGAGCATGAAATGCTCAAGTACCCACCTTCTTTGCTATCTGCTGGTGCA ATGTATACAGCCCAGTGCACCCTGGCTGGATCTAGCCAGTGGAACAAGACTCATGAGTGGTACAATTGCTACCCAGAAGATCAGCTTCTGGAACTTCCTC TTCATCTTCCACATCTTTAA
AA sequence Show only first row Show all	>Lus10036416 pacid=23174370 polypeptide=Lus10036416 locus=Lus10036416.g ID=Lus10036416.BGIv1.0 annot-version=v1.0 MQILFLPLPHLNFLDLFFPTVRSHQVNLHHKALARLQRFLSVRASVNESQDCPITDAEDFSAPMFVQHTELELLSFFLIALCLVEHEMLKYPPSLLSAGA MYTAQCTLAGSSQWNKTHEWYNCYPEDQLLELPLHLPHL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G20590			Cyclin family protein (.1)		Lus10036416 [exp]	0	1
					Lus10039435 [exp]	4.0	0.7370
AT4G34135		UGT73B2	UDP-glucosyltransferase 73B2 (...		Lus10010240 [exp]	10.4	0.6711
AT4G17810	C2H2ZnF	ZFP12	C2H2 and C2HC zinc fingers sup...		Lus10004578 [exp]	12.5	0.7119
AT5G61890	AP2_ERF		Integrase-type DNA-binding sup...		Lus10022426 [exp]	18.3	0.6629
AT1G10385			Vps51/Vps67 family (components...		Lus10017692 [exp]	21.0	0.6556
					Lus10037862 [exp]	22.2	0.6512
AT1G23030		PUB11	ARM repeat superfamily protein...		Lus10014900 [exp]	25.7	0.6240
AT4G24040		TREHALASE1, ATT...	trehalase 1 (.1)		Lus10032434 [exp]	27.2	0.6443
AT1G50560		CYP705A25	"cytochrome P450, family 705, ...		Lus10015706 [exp]	28.8	0.6193
AT2G19380			RNA recognition motif (RRM)-co...		Lus10020460 [exp]	37.0	0.6260

Compare expression of checked genes

Lus10036416 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.