Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G04270 941 / 0 RNEE/G RNAse E/G-like (.1.2.3.4.5)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041094 [exp] 1625 / 0 AT2G04270 957 / 0.0 RNAse E/G-like (.1.2.3.4.5)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G170300 [exp] 1041 / 0 AT2G04270 1009 / 0.0 RNAse E/G-like (.1.2.3.4.5)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF10150 [flax] [poplar] RNase_E_G Ribonuclease E/G family CL0369 [flax] [poplar] GHD PF00686 [flax] [poplar] CBM_20 Starch binding domain
Representative CDS sequence Show only first row Show all	>Lus10036417 pacid=23174472 polypeptide=Lus10036417 locus=Lus10036417.g ID=Lus10036417.BGIv1.0 annot-version=v1.0 ATGCATGTGCCGACGGTTACCGCTGGAAAATGCGTTGAAAGTTGGGCTCCGTTCGAGTTCGAGGTCTCGTTCATGTTTCAGAATTCCGGCGGTTTATGTA TTCCGTCGGAAGGACTGTGTGAGGTAGTTTGGAACGTAGAAGCTGATTTGGAAGATGGTCAGCACCTGTATCTTGGAGGGGAACTTACTTCTCTTGGTTG TTGGCAGACTGATAAGGCCATCCGAATGAGTCCTACAGAACACACTAATTTGTGGAGAGCTCAAGTGAAGATGCCTTGTGGTGTGAACTTCAAATATAAT TATTTCCTGAAGAAAGAAAGCTCAAATTCATCTGACATCAAGTGGAGAATAGGTCCTGACTTTTCCGTGTCAGTACCGTCGTCCAATGCAAAACAGGATA GGGAGGTTTTGGTGAGGGATTCATGGATGAAGAAGAATAACACTGCAATGGCTGCTCCAACTCAGGGATGGGATACTTGGATTGAAGATGCACATGTGAC AGTCCGACCTTTGCCTTCCGATGTCCACCCTTTTGAGAACCCATGGTTAGTCCAATCAGCCACTGTATTTGTGGTTGGTGAAGAGAAGTCTATTCCTAAA ACATCAGGAAGTGTAGAGGATGATGTTGTCTCAAACCTGGTCTCTGCATACTGCAATTGCAAAGCTATAGTCAAGTTGCCACCTGTAAATGGGAGCCATC TGATTTTGAAGAAAGATTTGGTCGAGACGATGATACTGATTAATTCTTCTGTATGCACATTGCAAAGGATTGCAGTATTAGAAGATGGGAAATTGGTTGA GCTGCTACTAGAACCTATTAAAACAGATGCTCAGTGTGATAGTGTGTATTTAGGAACTGTTACAAAACTTGCCCCACATATGAGTGGTGCATTTGTACAG ATAGGAAGCCAGAGATTCGCCTTCATGGCCATACAACAAAACAGAGGACCATTTATATTTCCACCCTTCCGTCAAAAGAACAACAAGGGAGAGGAAAATG GTTCGGTGCTTGAAGCCTTTGAAGAAGAACAGCCTGCTGTTAGTGAGGATGAACACAGTTTACCTGATCTAAAAGCCATTGATGATATCGTAGAATTTAT CTCTCAGGATGAATTGGTTAATGATGAGGAGCAGGATCTTGATGATGATTTTGATACGCCAGAGGAAAAGGTAAATGTTAATGGCATCATAGTTGATCAT GGGGAACTAGAAACTCACGTCGGGAAATTCTTGGATTTGAAGAACCATCTGCAAGCTGAAACAACTGGAGGTACCTTTGGTTCTTCGATTTCTCATTTAT ACGATGACGGTTATACATCAAGCAATGGAAACAGGTGGGGCCATGTCCGCAGAGGCACCAAGATAATTGTACAAGTTGTCAAAGAGGGATTGGGTACAAA AGGCCCTACCGTTACTGCTCATCCACAACTACGGAGCAGGTTCTGGATACTGAGCACTTGCTGTGACAGAATTGGAGTTTCAAGAAAGCTCTCAGAATTT GAGCGTTCACGTTTAAGAGTCATAGCAAAGACTTTGAAACCACCAGGATTTGGTGTAACTGCGAGGACTGCTGCTGCTGGCCATTCGTTAGAGGAACTAC AAAAAGACTTACAAAGTTTGCTTGCAACTTGGAAAGGTATAGTAGAACGTGCAAAATCCTCTGCTCTTGCTGCCGATGAAGGCATTGCAGGGACTATTCC TGTCATACTGCACAGGGCCAAGGGTCAAACGCTCTCGGTTGTGCAGGACTACTTCAATGATAAGGTTCAGAAAATGGTGGTCGACTCTCCTAGGACCTAT CATGAGGTTACAAACTATCTTCAAGACATTGCTCCTCATCTGTGTAACCGGGTTGAGTTGCATGATAAAAGGATTCCTCTTTTTGATGAATTCTGCATTG AAGAAGAGATTGATAACATGCTCAGTAAAAGAGTTCAACTATCAGATGGTGGCTCCCTGGTAATCGAACAAACGGAGGCTTTGGTCTCGATTGATGTGAA CGGTGGACATGTGATGCTTCGTGAAAGAACTTCACAAGAGAAAGCTGTTTTTGAAGTCAACCTTGCAGCTGCAAAGCAAATTGCAAGGGAGCTGCGTCTT AGAGATATTGGTGGCATCATTGTGGTAGACTTTATAGACATGGAAGATGCCTCACATAAGAAACTTGTATATGAAGAAATGAAGAGAGCTGTGGAGCGTG ACCGGTCGGTTGTGAACGTCTTTGAATTATCAAGGCACGGGCTTATGGAAATAACAAGAAAGAGGGTTCGACCAAGCGTGACTTTTATGATTAGCGAACC TTGCTCTTGCTGTCACGCCACTGGAAGGGTTGTAGCACTAGAGACATCCTTTTCGAAGATAGAACAACAAATTTGCCGGTTGCTCGTAATGATGGAAACT AAAGCAGACCCTGAAAACCCGAAGACATGGCCAAGATTTATCTTGAGGGTCGACCAGCACATGTCTGACTACTTGACTTCCGGGAGAAAGACGAGACTTG CAATCCTGAGCAGTTCTCTCAAAGTCTGGATACTTTTGAAGGTTGCTAGAGATTTCACGAGGGGGTTATTTGAAGTGAAACCCTTTACGGATGAGACGAC AACAGATAGCAGCAAAAGCCAACACCAGATTTCCTTGCAAGTAATCAAACGAGCCGAAGCCAGAAGGAGCAATTCTGGCAGGAACTTGACTGTCTTCCCT GTTAATAAACGCAACACCGGTAGAAAATGA
AA sequence Show only first row Show all	>Lus10036417 pacid=23174472 polypeptide=Lus10036417 locus=Lus10036417.g ID=Lus10036417.BGIv1.0 annot-version=v1.0 MHVPTVTAGKCVESWAPFEFEVSFMFQNSGGLCIPSEGLCEVVWNVEADLEDGQHLYLGGELTSLGCWQTDKAIRMSPTEHTNLWRAQVKMPCGVNFKYN YFLKKESSNSSDIKWRIGPDFSVSVPSSNAKQDREVLVRDSWMKKNNTAMAAPTQGWDTWIEDAHVTVRPLPSDVHPFENPWLVQSATVFVVGEEKSIPK TSGSVEDDVVSNLVSAYCNCKAIVKLPPVNGSHLILKKDLVETMILINSSVCTLQRIAVLEDGKLVELLLEPIKTDAQCDSVYLGTVTKLAPHMSGAFVQ IGSQRFAFMAIQQNRGPFIFPPFRQKNNKGEENGSVLEAFEEEQPAVSEDEHSLPDLKAIDDIVEFISQDELVNDEEQDLDDDFDTPEEKVNVNGIIVDH GELETHVGKFLDLKNHLQAETTGGTFGSSISHLYDDGYTSSNGNRWGHVRRGTKIIVQVVKEGLGTKGPTVTAHPQLRSRFWILSTCCDRIGVSRKLSEF ERSRLRVIAKTLKPPGFGVTARTAAAGHSLEELQKDLQSLLATWKGIVERAKSSALAADEGIAGTIPVILHRAKGQTLSVVQDYFNDKVQKMVVDSPRTY HEVTNYLQDIAPHLCNRVELHDKRIPLFDEFCIEEEIDNMLSKRVQLSDGGSLVIEQTEALVSIDVNGGHVMLRERTSQEKAVFEVNLAAAKQIARELRL RDIGGIIVVDFIDMEDASHKKLVYEEMKRAVERDRSVVNVFELSRHGLMEITRKRVRPSVTFMISEPCSCCHATGRVVALETSFSKIEQQICRLLVMMET KADPENPKTWPRFILRVDQHMSDYLTSGRKTRLAILSSSLKVWILLKVARDFTRGLFEVKPFTDETTTDSSKSQHQISLQVIKRAEARRSNSGRNLTVFP VNKRNTGRK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G04270		RNEE/G	RNAse E/G-like (.1.2.3.4.5)		Lus10036417 [exp]	0	1
AT3G13490		ATKRS-2, OVA5	OVULE ABORTION 5, ARABIDOPSIS ...		Lus10013408 [exp]	1.0	0.9577
AT1G30520		AAE14	acyl-activating enzyme 14 (.1)		Lus10036027 [exp]	2.0	0.9478
					Lus10006129 [exp]	2.8	0.9248
AT5G04810			pentatricopeptide (PPR) repeat...		Lus10043434 [exp]	3.5	0.9301
AT3G13180			NOL1/NOP2/sun family protein /...		Lus10016622 [exp]	3.7	0.9133
AT2G04270		RNEE/G	RNAse E/G-like (.1.2.3.4.5)		Lus10041094 [exp]	4.6	0.9476
AT2G13440			glucose-inhibited division fam...		Lus10014348 [exp]	4.6	0.9256
AT2G28070		ABCG3	ATP-binding cassette G3, ABC-2...		Lus10016125 [exp]	5.5	0.9170
AT5G16715		EMB2247	embryo defective 2247, ATP bin...		Lus10009139 [exp]	5.9	0.9373
AT2G25870			haloacid dehalogenase-like hyd...		Lus10005489 [exp]	7.1	0.9093

Compare expression of checked genes

Lus10036417 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.