Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G48240 214 / 2e-67 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041095 [exp] 530 / 0 AT5G48240 243 / 2e-77 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G170500 [exp] 269 / 3e-89 AT5G48240 219 / 6e-70 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07890 [flax] [poplar] Rrp15p Rrp15p
Representative CDS sequence Show only first row Show all	>Lus10036418 pacid=23174644 polypeptide=Lus10036418 locus=Lus10036418.g ID=Lus10036418.BGIv1.0 annot-version=v1.0 ATGGCCGAGGTAGCCCCCCAGGTTCAAGAATCCGGAACCGCAATGAACAAACGGAAATCAGGGCGCAACAAGGCCGGCAAAGCTAGGAAAAAGCAGAAGC AGTTTTCCGGCACGATGGGGGAGCGAGTGAGGAAAATTGATCCCAAACTGAAGAAGTTTCTCCGCAAGAAGGCTCGCGACTATGATTCCGATAACGAAGA AGATGAACTGGAAGAGAAGAGAGGACCTGAAGTAGTAGTAGATGATGACGCTGTTCAAGTTTCCAAGGATGAAGGTTTGAATTTGAATAATGATGAAAAA GAAGCCGATGAACCCGGGTCGGATGATGATGTATACGACGTCGGTGCAATTCTGCCTGGAATCACGAAGCTGAGTGAGGGCTGTAGAGCTTTCAGTGTTG CTTTCAATAGTATAATCAAGAAGAATGTATCTGAAGATCCACTGGGACCTGTGCTATCAGGACACAAAAAGCTACTAGCAGAGAAGCTTGCTGAGGAGAA TGCTGAAAGAAAAGCCAAAGGAGATGCCCAAAAAGAGAAAAGAATGGTTGCTGAGAAGGGGCATAAGGTGCCTGCTGAATTCTTAGTCACCCATGAAAAG TTCCTGATAAGTGTAGCCACAAAGGGAGCTGATCGTGTTTTTTGGTTGCATGTATCGCTTGTGATGCCAGTGGTGAAGTTGTTCAATGCAGTTAACAAGG CGCAGGTTGCGCAGAAAGGATTAAATCCGTTGAGGTCAAAAGATGCAAAAGTTATCAACAAAAGAAGGAAGCAGGCGTTCTTCTCAGAGATACGCAAAAC TTCGTCCACCGATTCCAAGGTTAATGCATCAGAAGGCAACGCAGAGGGAGCAGCTCCATCATGGGCTCCCCTGCGAGATAACTATATGCTAACGAATCCC TCGTTGAAAGATTGGGATAAGAATCCGGAATCTGGTAGCATAGGATATGGAAGTAGTGGGAAAATGTCCGATGACAGTAGTTCAGATGAGGATTGA
AA sequence Show only first row Show all	>Lus10036418 pacid=23174644 polypeptide=Lus10036418 locus=Lus10036418.g ID=Lus10036418.BGIv1.0 annot-version=v1.0 MAEVAPQVQESGTAMNKRKSGRNKAGKARKKQKQFSGTMGERVRKIDPKLKKFLRKKARDYDSDNEEDELEEKRGPEVVVDDDAVQVSKDEGLNLNNDEK EADEPGSDDDVYDVGAILPGITKLSEGCRAFSVAFNSIIKKNVSEDPLGPVLSGHKKLLAEKLAEENAERKAKGDAQKEKRMVAEKGHKVPAEFLVTHEK FLISVATKGADRVFWLHVSLVMPVVKLFNAVNKAQVAQKGLNPLRSKDAKVINKRRKQAFFSEIRKTSSTDSKVNASEGNAEGAAPSWAPLRDNYMLTNP SLKDWDKNPESGSIGYGSSGKMSDDSSSDED

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G48240			unknown protein		Lus10036418 [exp]	0	1
AT5G64420			DNA polymerase V family (.1)		Lus10037435 [exp]	1.7	0.9452
AT5G48240			unknown protein		Lus10041095 [exp]	2.4	0.9295
AT1G15440		ATPWP2	\(PERIODIC TRYPTOPHAN PROTEIN ...		Lus10034114 [exp]	5.1	0.9434
AT1G14850		NUP155	nucleoporin 155 (.1)		Lus10001586 [exp]	6.7	0.9319
AT3G11830			TCP-1/cpn60 chaperonin family ...		Lus10026773 [exp]	7.5	0.9314
AT4G34260		AXY8, FUC95A	ALTERED XYLOGLUCAN 8, 1,2-alph...		Lus10026594 [exp]	9.8	0.9242
AT5G25757			RNA polymerase I-associated fa...		Lus10038622 [exp]	13.6	0.9299
AT1G67680			SRP72 RNA-binding domain (.1)		Lus10037059 [exp]	13.7	0.9117
AT5G20890			TCP-1/cpn60 chaperonin family ...		Lus10014511 [exp]	13.9	0.9116
AT3G49180		RID3	ROOT INITIATION DEFECTIVE 3, T...		Lus10013988 [exp]	14.7	0.9249

Compare expression of checked genes

Lus10036418 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.