Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G48250 279 / 4e-91 CO COL10 B-box type zinc finger protein with CCT domain (.1) AT3G07650 270 / 7e-88 CO COL9 CONSTANS-like 9 (.1.2.3.4) AT3G21880 146 / 4e-40 CO COL12 B-box type zinc finger protein with CCT domain (.1) AT4G15250 91 / 4e-20 CO COL11 B-box type zinc finger protein with CCT domain (.1) AT1G68190 72 / 1e-13 CO B-box zinc finger family protein (.1) AT2G33500 68 / 2e-12 CO COL14 B-box type zinc finger protein with CCT domain (.1.2) AT1G28050 65 / 2e-11 CO COL15 B-box type zinc finger protein with CCT domain (.1) AT2G47890 56 / 8e-09 CO COL13 B-box type zinc finger protein with CCT domain (.1.2) AT1G05290 54 / 7e-08 CCT motif family protein (.1) AT5G24930 42 / 0.0004 CO COL4, ATCOL4 CONSTANS-like 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041096 [exp] 281 / 3e-92 AT5G48250 374 / 2e-129 B-box type zinc finger protein with CCT domain (.1) Lus10031584 [exp] 138 / 2e-36 AT3G21880 256 / 2e-81 B-box type zinc finger protein with CCT domain (.1) Lus10015098 [exp] 136 / 3e-36 AT3G21880 260 / 4e-84 B-box type zinc finger protein with CCT domain (.1) Lus10039695 [exp] 74 / 5e-14 AT4G15250 207 / 4e-63 B-box type zinc finger protein with CCT domain (.1) Lus10002578 [exp] 69 / 3e-12 AT1G28050 299 / 3e-97 B-box type zinc finger protein with CCT domain (.1) Lus10001806 [exp] 66 / 2e-11 AT1G28050 298 / 1e-96 B-box type zinc finger protein with CCT domain (.1) Lus10040900 [exp] 61 / 8e-10 AT2G47890 289 / 1e-95 B-box type zinc finger protein with CCT domain (.1.2) Lus10035257 [exp] 55 / 4e-08 AT1G68190 194 / 8e-59 B-box zinc finger family protein (.1) Lus10034625 [exp] 53 / 3e-07 AT1G68190 182 / 3e-52 B-box zinc finger family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G214500 [exp] 378 / 2e-129 AT3G07650 355 / 9e-121 CONSTANS-like 9 (.1.2.3.4) Potri.014G170600 [exp] 358 / 8e-122 AT3G07650 328 / 3e-110 CONSTANS-like 9 (.1.2.3.4) Potri.007G121200 [exp] 179 / 6e-52 AT3G21880 291 / 1e-95 B-box type zinc finger protein with CCT domain (.1) Potri.017G039301 [exp] 162 / 1e-45 AT3G21880 288 / 2e-94 B-box type zinc finger protein with CCT domain (.1) Potri.001G061800 [exp] 74 / 4e-14 AT2G33500 213 / 6e-64 B-box type zinc finger protein with CCT domain (.1.2) Potri.003G166000 [exp] 69 / 1e-12 AT1G28050 204 / 2e-59 B-box type zinc finger protein with CCT domain (.1) Potri.008G125200 [exp] 63 / 1e-10 AT1G68190 144 / 8e-39 B-box zinc finger family protein (.1) Potri.002G208100 [exp] 59 / 2e-09 AT2G47890 276 / 4e-91 B-box type zinc finger protein with CCT domain (.1.2) Potri.001G323500 [exp] 58 / 5e-09 AT2G33500 213 / 2e-64 B-box type zinc finger protein with CCT domain (.1.2) Potri.014G134601 [exp] 56 / 1e-08 AT2G47890 174 / 4e-53 B-box type zinc finger protein with CCT domain (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0281 [flax] [poplar] CCT PF06203 [flax] [poplar] CCT CCT motif
Representative CDS sequence Show only first row Show all	>Lus10036419 pacid=23174650 polypeptide=Lus10036419 locus=Lus10036419.g ID=Lus10036419.BGIv1.0 annot-version=v1.0 ATGCGCTGTCGAAGCGCTGCAAATGCGCTGTCGAAGCGGCATTCAAGAACCTTACTCTGTGAGAGGTGCAGTTCACAGCCTGCGCTAGTTAGGTGTGCGG AAGAGAAGGTTTCTCTTTGTCAGAACTGTAACTGGATGGGTCATGGCGGTGGTTCTTCTTCCAATTCAGCAAGTTCCTCGCACAAGAGGCAGACTATCAA TTGTTACTCCGGCTGCCCTTCTGCCTCTGAGCTTTCTTCAATATGGTCCTTCGTTTTGGACTTCCCTGAAGCTGAAACTTCTACAATGTATGAGCAAGGG ATGGGTTTAATGAGCATAGCTGAAAATGTTGCCACAAATAGCTGGCCTTCTTCCAATGATAACCAGAACCAGGGAGGCAGCAATATGACTTCACGTGATG TTGGGAAATCAAGTGTTTGGGACAATGGATCGAGGTCTCGAACGATGCCTCCCGAGTCCAGTGCCAATTCTGACAATTCTGCGAGACCAGCTAGTTCGAC GATGCCAAAGTTAGGATATCCTGGAAGTAAAGGTCCGACATTCCGGGAAGAAGATGATGGTCTCTATGATGACTTCAATATGGACGAGATGGACTTGAAC CTTGAGAACTACGACGAGCTCTTTGATGGAGGGGATGCTTTTGAGCATGGTGGGATGGATAGTTTGTTTGGGACAAAAGACATGTCTGTTGCTGATCCTA GCTACCATAGTGGTGCTGCAGCTGAGGGGTCATCTGCTGGACGTATGAATTCAATGCAGCAGCAGCAGCAGCCGACATGCAGCAATGCAGCATCTGCTGA TTCCATCATGAGTACTAAAACCGAACCAGCTGTTTGTCTAACGGGGAGGCAGCTCCATTCAAACCTCTCGTTTTCTGGCGTTACTGGGGAAAGTAGCGGT GGAGATTATCAAGATTGTGGAGTTTCTCCAATGCTATTAATGGGAGAGCCTCCATGGGGTTCCCCTTGTGCTGAGGGTTCCCCGTCAGCAAACCGGAGTA ATGCTGTGATGCGATACAAAGAAAAGAAGAAGACACGCAAGTTCGAAAAGAGAGTAAGGTATGCTTCCCGCAAAGAAAGAGCTGATGTACGGAAGCGTGT GAAAGGTCGTTTCGTGAAAGCCGGTGAAACATACGATTATGATCCTTTATCTCAAACCAGAAGCTATTAA
AA sequence Show only first row Show all	>Lus10036419 pacid=23174650 polypeptide=Lus10036419 locus=Lus10036419.g ID=Lus10036419.BGIv1.0 annot-version=v1.0 MRCRSAANALSKRHSRTLLCERCSSQPALVRCAEEKVSLCQNCNWMGHGGGSSSNSASSSHKRQTINCYSGCPSASELSSIWSFVLDFPEAETSTMYEQG MGLMSIAENVATNSWPSSNDNQNQGGSNMTSRDVGKSSVWDNGSRSRTMPPESSANSDNSARPASSTMPKLGYPGSKGPTFREEDDGLYDDFNMDEMDLN LENYDELFDGGDAFEHGGMDSLFGTKDMSVADPSYHSGAAAEGSSAGRMNSMQQQQQPTCSNAASADSIMSTKTEPAVCLTGRQLHSNLSFSGVTGESSG GDYQDCGVSPMLLMGEPPWGSPCAEGSPSANRSNAVMRYKEKKKTRKFEKRVRYASRKERADVRKRVKGRFVKAGETYDYDPLSQTRSY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G48250	CO	COL10	B-box type zinc finger protein...		Lus10036419 [exp]	0	1
AT5G48250	CO	COL10	B-box type zinc finger protein...		Lus10041096 [exp]	1.0	0.9336
AT5G61380		AtTOC1, TOC1, A...	PSEUDO-RESPONSE REGULATOR 1, T...		Lus10015720 [exp]	2.8	0.8996
AT5G06690		WCRKC1	WCRKC thioredoxin 1 (.1.2)		Lus10021067 [exp]	4.0	0.8657
AT5G23240			DNAJ heat shock N-terminal dom...		Lus10040990 [exp]	5.2	0.8876
AT4G02340			alpha/beta-Hydrolases superfam...		Lus10037559 [exp]	6.3	0.8334
					Lus10027443 [exp]	6.9	0.8141
AT3G20810		JMJ30, JMJD5	2-oxoglutarate (2OG) and Fe(II...		Lus10031247 [exp]	7.0	0.8446
AT5G23240			DNAJ heat shock N-terminal dom...		Lus10008768 [exp]	7.1	0.8512
AT3G20810		JMJ30, JMJD5	2-oxoglutarate (2OG) and Fe(II...		Lus10031818 [exp]	9.5	0.8140
AT5G55710		AtTic20-V	translocon at the inner envelo...		Lus10031203 [exp]	10.6	0.8113

Compare expression of checked genes

Lus10036419 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.