Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G18840 125 / 1e-32 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT1G08070 117 / 2e-29 EMB3102, OTP82 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G06540 115 / 5e-29 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G66520 115 / 8e-29 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G40405 108 / 2e-26 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G20540 105 / 2e-25 MEF21 mitochondrial editing factor 21 (.1) AT5G44230 104 / 5e-25 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G26630 100 / 4e-24 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G29230 100 / 1e-23 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G02750 98 / 1e-22 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041097 [exp] 439 / 7e-153 AT5G66520 367 / 2e-119 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10014298 [exp] 127 / 6e-33 AT5G66520 748 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10026006 [exp] 123 / 1e-31 AT5G66520 746 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10031423 [exp] 116 / 3e-29 AT5G66520 538 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10014113 [exp] 112 / 1e-27 AT3G29230 767 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10019797 [exp] 110 / 3e-27 AT3G29230 768 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10010909 [exp] 110 / 4e-27 AT5G66520 537 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10030053 [exp] 108 / 1e-26 AT1G08070 884 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10005987 [exp] 106 / 7e-26 AT5G08510 602 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G106500 [exp] 244 / 6e-77 AT2G29760 422 / 4e-139 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.017G086100 [exp] 117 / 1e-29 AT5G15300 675 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.002G175900 [exp] 108 / 8e-27 AT5G08510 608 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G019500 [exp] 108 / 3e-26 AT2G22410 791 / 0.0 SLOW GROWTH 1 (.1) Potri.017G141200 [exp] 105 / 9e-26 AT5G66520 407 / 1e-135 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.018G040100 [exp] 106 / 1e-25 AT1G08070 974 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G119000 [exp] 105 / 3e-25 AT5G44230 792 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G012600 [exp] 102 / 2e-24 AT2G29760 540 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G087100 [exp] 100 / 7e-24 AT3G29230 368 / 1e-119 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.014G046200 [exp] 100 / 1e-23 AT2G44880 676 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10036420 pacid=23174600 polypeptide=Lus10036420 locus=Lus10036420.g ID=Lus10036420.BGIv1.0 annot-version=v1.0 ATGACCATCTTCTCATCCGCTTCATTTCTCATCTCACACTCAAAACCTTACGAACTCAGTTGTAGCAGCACTAGTTCATCACTCTCCGCCCCTAAATCTC AGCCAAGGAAACCAGTTCCCGCCATTTCATTGCTCCGGCTATGCATCGACTACAAGGAGCTACTTCAAGTCCAGGCAATCCTACTCAAGACTTCCCTCAT TAAAGAAAAGCACGCTTTCGGCCGTCTCCTCTCCTCTTTCGCCGCTCTCCGTGGCTCTTCCTCCGGCCTCGATCACGCTCAGAAGCTCTTCGATCTCGCA GACATCCCGAGGAACTTCTTCATGTACTACACCTTGATGAGAGCGCAATCCCCGAAAACTGCGTTTCTTCTTTACTCGGCCATGGTTTCCGAATACGATC CGATTGTATCTCCAGACGATTACACTTTCACTTTTGTGTTCTCCGCTTGCGCCAAGTTTCACGGCGTGTCTGGAAGGGAAACAGGCTCATGGGCAGATGG TGAAATCCCCGGTGAAGTTCGGGGTTCATTCGTGGAACTCGTTGATGGATTTCGTGGAATTTGTTTGATTGATGGATATGTCAAATCGGGGGAGCTGAAA ATTGCTAGGCAACTGTTCGACGAAATGCCTCAGAGAGATGTTGTGTCTTGGACGACGATGCTTGCTGCGTATGTCAACGCCGGGTTGCTCTCCTATGCGT CTGACTTGTTTGAGGAAATGCCTGAAAGAAACTTGTTCTCTTGGACTGCTATGATCAACGGCTACATCCAAATGGGATGCTGCAGTAAAGCTTTGGATGT TCTGAAAAGGATGCAGTCTGCCTAG
AA sequence Show only first row Show all	>Lus10036420 pacid=23174600 polypeptide=Lus10036420 locus=Lus10036420.g ID=Lus10036420.BGIv1.0 annot-version=v1.0 MTIFSSASFLISHSKPYELSCSSTSSSLSAPKSQPRKPVPAISLLRLCIDYKELLQVQAILLKTSLIKEKHAFGRLLSSFAALRGSSSGLDHAQKLFDLA DIPRNFFMYYTLMRAQSPKTAFLLYSAMVSEYDPIVSPDDYTFTFVFSACAKFHGVSGRETGSWADGEIPGEVRGSFVELVDGFRGICLIDGYVKSGELK IARQLFDEMPQRDVVSWTTMLAAYVNAGLLSYASDLFEEMPERNLFSWTAMINGYIQMGCCSKALDVLKRMQSA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G18840			Pentatricopeptide repeat (PPR-...		Lus10036420 [exp]	0	1
AT5G66520			Tetratricopeptide repeat (TPR)...		Lus10036421 [exp]	1.0	0.9190
AT1G59720		CRR28	CHLORORESPIRATORY REDUCTION28,...		Lus10036422 [exp]	14.1	0.8252
					Lus10008385 [exp]	14.2	0.8945
AT5G28010			Polyketide cyclase/dehydrase a...		Lus10039863 [exp]	18.4	0.8803
AT4G21120		CAT1, AAT1	CATIONIC AMINO ACID TRANSPORTE...		Lus10028116 [exp]	20.0	0.8244
					Lus10029652 [exp]	20.7	0.8793
AT3G48360		ATBT2, BT2	BTB and TAZ domain protein 2 (...		Lus10018087 [exp]	22.8	0.8541
AT1G21850		SKS8	SKU5 similar 8 (.1)		Lus10022648 [exp]	23.8	0.8779
AT2G39510			nodulin MtN21 /EamA-like trans...		Lus10040310 [exp]	26.2	0.8777
AT3G58150			Optic atrophy 3 protein (OPA3)...		Lus10039862 [exp]	27.7	0.8772

Compare expression of checked genes

Lus10036420 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.