Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G59720 160 / 1e-45 CRR28 CHLORORESPIRATORY REDUCTION28, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G31920 158 / 3e-45 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G62890 151 / 1e-42 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G49170 152 / 2e-42 EMB2261 embryo defective 2261, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G29760 152 / 2e-42 OTP81 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G48910 150 / 6e-42 LPA66 LOW PSII ACCUMULATION 66, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G18750 150 / 8e-42 DOT4 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G37380 148 / 3e-41 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G40410 147 / 3e-41 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G20540 145 / 6e-41 MEF21 mitochondrial editing factor 21 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041097 [exp] 385 / 9e-133 AT5G66520 367 / 2e-119 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10017243 [exp] 152 / 2e-43 AT1G13410 539 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10022124 [exp] 147 / 2e-43 AT2G20540 345 / 1e-116 mitochondrial editing factor 21 (.1) Lus10040680 [exp] 154 / 3e-43 AT2G29760 926 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10030125 [exp] 151 / 5e-43 AT2G20540 618 / 0.0 mitochondrial editing factor 21 (.1) Lus10018223 [exp] 152 / 2e-42 AT2G29760 931 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10030415 [exp] 150 / 8e-42 AT1G69350 814 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10014298 [exp] 149 / 2e-41 AT5G66520 748 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10021069 [exp] 147 / 2e-41 AT1G13410 533 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G106500 [exp] 219 / 2e-68 AT2G29760 422 / 4e-139 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.009G044700 [exp] 166 / 2e-47 AT2G29760 1013 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.018G092400 [exp] 163 / 4e-47 AT1G59720 810 / 0.0 CHLORORESPIRATORY REDUCTION28, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.018G035900 [exp] 159 / 1e-45 AT2G20540 709 / 0.0 mitochondrial editing factor 21 (.1) Potri.005G053600 [exp] 157 / 8e-45 AT3G04750 759 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G369900 [exp] 157 / 1e-44 AT5G66520 512 / 2e-175 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.018G040100 [exp] 156 / 5e-44 AT1G08070 974 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G135400 [exp] 153 / 2e-43 AT1G31920 738 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G031600 [exp] 154 / 4e-43 AT3G15930 784 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G059400 [exp] 154 / 4e-43 AT4G18750 1110 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10036422 pacid=23174419 polypeptide=Lus10036422 locus=Lus10036422.g ID=Lus10036422.BGIv1.0 annot-version=v1.0 ATGTTGGGAGGATTAGGAACACATTCATTTGGACAGGAAGCTGTTAAGCTATTCGAAAAGATGACAAAGGACGACCGAGTCGACCCGAATGAGATAACCT ACATCAATATTTTGGCAGCTTGCAACCATTCTGGTTTAGTACACGACGGGTTTCGAATCTTTAACAGATTGTTGAAGGATCAGAGAGTAAAGCCATCGAT CGAGCATTACATGTGTTTGATAGGTTTACTGGGTCGAGCCGGGTTGGTGCAGGATTCAGTTGGAATGATTATTACTATGCCAATGAAAGCTGATGGGGCT ATATGGAGAGCCCGCCTTAGTAACGTCTGTAGATCGTACAGGAATGCGGAGTTTGTGGACGAAATCGAGAAGATTTTGATGGAGATAGAGCTGCTGAATC ATACGAACTACGTTCGGGTTTCGAATGCTTACGCACTTGTTAATAGATGGGAAGCTGTTGGGAAGCTCAGGAAGGAGATGAAGGTAAAAGGGTTGGTGAA GACTCCTGGATGTAGCTCGATTGTCGTAGATGGTGTTGTCCATGAGTTCGTGGCAGGCGATGATTTTAACTCGCGGACCAAACCGGTTTCCAAGTTGTTG TGTTTGATGGCTAATCACATGAAGCACGATCGATTCAGGGATCTTTAG
AA sequence Show only first row Show all	>Lus10036422 pacid=23174419 polypeptide=Lus10036422 locus=Lus10036422.g ID=Lus10036422.BGIv1.0 annot-version=v1.0 MLGGLGTHSFGQEAVKLFEKMTKDDRVDPNEITYINILAACNHSGLVHDGFRIFNRLLKDQRVKPSIEHYMCLIGLLGRAGLVQDSVGMIITMPMKADGA IWRARLSNVCRSYRNAEFVDEIEKILMEIELLNHTNYVRVSNAYALVNRWEAVGKLRKEMKVKGLVKTPGCSSIVVDGVVHEFVAGDDFNSRTKPVSKLL CLMANHMKHDRFRDL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G59720		CRR28	CHLORORESPIRATORY REDUCTION28,...		Lus10036422 [exp]	0	1
AT4G14103			F-box/RNI-like superfamily pro...		Lus10017218 [exp]	6.7	0.7389
AT5G66520			Tetratricopeptide repeat (TPR)...		Lus10036421 [exp]	9.3	0.8458
AT5G48250	CO	COL10	B-box type zinc finger protein...		Lus10036419 [exp]	11.8	0.7526
AT4G18840			Pentatricopeptide repeat (PPR-...		Lus10036420 [exp]	14.1	0.8252
AT4G21120		CAT1, AAT1	CATIONIC AMINO ACID TRANSPORTE...		Lus10028116 [exp]	18.4	0.7532
AT1G49230			RING/U-box superfamily protein...		Lus10006786 [exp]	19.1	0.7093
AT5G66520			Tetratricopeptide repeat (TPR)...		Lus10041097 [exp]	37.4	0.7314
AT3G55240			Plant protein 1589 of unknown ...		Lus10030322 [exp]	40.1	0.7031
					Lus10008385 [exp]	41.5	0.7152
AT5G37820		NIP4;2, NLM5	NODULIN- 26-LIKE MAJOR INTRINS...		Lus10025744 [exp]	45.5	0.7032

Compare expression of checked genes

Lus10036422 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.