Plant FIBer expression Database

Lus10036423 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G07640 221 / 1e-72 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10041098
[exp]
428 / 1e-153 AT3G07640 204 / 2e-65 unknown protein
Poplar homologues

No hit found
PFAM info
Representative CDS sequence
>Lus10036423 pacid=23174657 polypeptide=Lus10036423 locus=Lus10036423.g ID=Lus10036423.BGIv1.0 annot-version=v1.0
ATGAAATTAGCTCCACAGACTGTTCTTCTGTTCAAGGACAAAGATGGCTTCGCTTCAGCAATGGCCAAGGGTCTCGATGCTAATCCTAGCTCCGGTTTGA
ATAAGCTAGAAGATTCATTCGAGCTGCCGCTGGACAGCTACGGAGTGAAGGGCTGGAAAGTTTCCGGCGATTTAATTCATTTCGTCGACGATCAAGGGAA
TTTCCAGGTGTCGTTGCTTCTGCTGGAAAAGTACGAGCCACCAATGTTAGCTTGCGCCATGAATGAAATTCTAGCTCACATAGTTAGAGGAGCATCATCA
TCATCAGAATCATCAACCTTACCCACGCTCATCGTTCCCTTCACTGGAGCATCAAAGTTAAAGTGGGACACGAAAACCCCTCTGACAAATAAAGGTCAGG
CAAAGCTGTACAGCATCCAGTTTGGACCGGAAACTGATATAGCTCAGGCGATTGCCAACAAGACACAAAGGCCACCGTCCTCGTTCCATGTCCATCACGA
ACCTCTTGCCTGCTTTCTTCAGTTGGCTCGTGTACTGAAGCTGTCGACTTGTGTTGTCTTCAGACTAGGAGGGCATCGAGATTCTTCCTCGGATGAGATT
GAGGCACTTCACCAGACGGGGGAGTTTCTGGGGAAGAGCACAGGATTATGCTTCTTGAAGGAAAACGCGGCGTGGAACCCAAGGGAAGAGTCGAAGGAGA
GCGAGGAGCCATGGCGTGCACTCTATGGTTGA
AA sequence
>Lus10036423 pacid=23174657 polypeptide=Lus10036423 locus=Lus10036423.g ID=Lus10036423.BGIv1.0 annot-version=v1.0
MKLAPQTVLLFKDKDGFASAMAKGLDANPSSGLNKLEDSFELPLDSYGVKGWKVSGDLIHFVDDQGNFQVSLLLLEKYEPPMLACAMNEILAHIVRGASS
SSESSTLPTLIVPFTGASKLKWDTKTPLTNKGQAKLYSIQFGPETDIAQAIANKTQRPPSSFHVHHEPLACFLQLARVLKLSTCVVFRLGGHRDSSSDEI
EALHQTGEFLGKSTGLCFLKENAAWNPREESKESEEPWRALYG

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G07640 unknown protein Lus10036423
[exp]
0 1
AT5G59950 RNA-binding (RRM/RBD/RNP motif... Lus10024413
[exp]
3.7 0.7556
AT3G51850 CPK13 calcium-dependent protein kina... Lus10027808
[exp]
4.6 0.7502
AT3G51850 CPK13 calcium-dependent protein kina... Lus10005038
[exp]
7.4 0.7237
AT4G31300 PBA1 N-terminal nucleophile aminohy... Lus10026984
[exp]
8.3 0.6775
AT5G18110 NCBP novel cap-binding protein (.1) Lus10020282
[exp]
8.8 0.7204
AT3G58110 unknown protein Lus10002186
[exp]
12.0 0.7227
AT4G15790 unknown protein Lus10008380
[exp]
17.2 0.7497
AT5G44170 S-adenosyl-L-methionine-depend... Lus10018640
[exp]
17.2 0.7200
AT5G66140 PAD2 proteasome alpha subunit D2 (.... Lus10041890
[exp]
19.9 0.7112
AT5G37930 Protein with RING/U-box and TR... Lus10009111
[exp]
24.3 0.7520

Lus10036423 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.