Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G31340 356 / 3e-120 myosin heavy chain-related (.1.2) AT2G24420 333 / 3e-111 DNA repair ATPase-related (.1.2) AT4G30090 126 / 2e-32 EMB1353 embryo defective 1353 (.1) AT1G28410 46 / 3e-05 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041099 [exp] 617 / 0 AT4G31340 397 / 3e-136 myosin heavy chain-related (.1.2) Lus10020166 [exp] 459 / 3e-160 AT4G31340 451 / 8e-157 myosin heavy chain-related (.1.2) Lus10026967 [exp] 456 / 4e-159 AT4G31340 449 / 3e-156 myosin heavy chain-related (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G276900 [exp] 421 / 2e-145 AT2G24420 474 / 9e-166 DNA repair ATPase-related (.1.2) Potri.018G003700 [exp] 419 / 2e-144 AT2G24420 462 / 5e-161 DNA repair ATPase-related (.1.2) Potri.006G076700 [exp] 145 / 1e-39 AT4G31340 157 / 5e-44 myosin heavy chain-related (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10036424 pacid=23174494 polypeptide=Lus10036424 locus=Lus10036424.g ID=Lus10036424.BGIv1.0 annot-version=v1.0 ATGGCGGCCGCTAAGCTCCTCATCTTGGCGTTCTTCCTTGCCCTAGCATTTTCTGCTGCTTGGGTGGACTCTTCGGTTGATAGCGATGGCGATCAGCTGC CAGCCAGTAAAGTCGCTGGATCTAAGGACCTCGACTCCTCCACTCAGAATATCGAACTGCACCAACTGACTTCCAAGATCCAAGACCTTGAGTCGCAGAT TGATAAGAAAACATGGGAATTGAAGGTAAAAGACAAGAAATTAGCTGAGAATGAGAAAGCAATAAAAGAGAAGGCTGATAGCATTAGATCGTTGCAGAGT GAAGTTTCATCCCTTCAGAAAAAAGGGAAGTTGGATTCTAGTGAGGAGGTGAACAAGGCCAATGCAGTGACTGTTGAGTTGGAGAAGCAGCTTGATAAAC TTAAAGAAAATTTTGAGGCGCAAAATGCAGAGAAAGAGGCCCTCCAATCTAAGGCAACTGAAGCTGATTTGAAGGTTGACGAAGTGAACTCAAAACTGAA GGATCTTCAGAAGATCAGCAATGAGCAAAAGAGCAAAATCATGAAAATCGAGCGCGCTCTTAAAGTTGCTGAGGAAGAAATGATGAAGGCAAAGCTGGAG GCTAGCTCGAAAACAAAGGAGTTACTCGAGGTTCATGGTGTTTGGCTCCCTCCATGGCTTGCAGTCCAATTATTTCGCTTTCAGGGTTTGGTCAATAAAC ATTGGAATGATCACGGCCAGCCAACCGTGGAATTAGTGTATCAAAAGGCCCTGGAGAAGAAGGCAAAGGCTGCTAAGTGGGCTGAGCCACATCTAGAGAC AGTAAAAACTAAATGGATCCCAACGGTGAAGGATAAGTTAGTGGCTGTAATTACTCACGTTGAACCACATGTGCGGTCACTAACTGCAAAATCAGTGGGA TTTTATGATACCTCAAAGACCACAATAGAAGTTCACCTAATCAGAGTACAAGAGATCGTCGATCCATACTTTCAGGAAGCTAAGAAATTCAGTAAGCCAT ATATTGATCAGATCGCCACAGTTGCTGAACCGCATGTTAACAGAATTAAGGTGGTCGTGAAACCATACACGAAGAAAGTTGCTCGTGCTTACGGGAGTTT CCTAGAGTCAGCAACTGCATATCATAATCAGGTGCAAGGAACTGTTCAAGATACCCTGGAAAGGCACGAGTTGACGAAACCACTTGCAACTAAAGAATTT GTCTGGTTTGTGGTATGCAACAAAAGAAACTACTAG
AA sequence Show only first row Show all	>Lus10036424 pacid=23174494 polypeptide=Lus10036424 locus=Lus10036424.g ID=Lus10036424.BGIv1.0 annot-version=v1.0 MAAAKLLILAFFLALAFSAAWVDSSVDSDGDQLPASKVAGSKDLDSSTQNIELHQLTSKIQDLESQIDKKTWELKVKDKKLAENEKAIKEKADSIRSLQS EVSSLQKKGKLDSSEEVNKANAVTVELEKQLDKLKENFEAQNAEKEALQSKATEADLKVDEVNSKLKDLQKISNEQKSKIMKIERALKVAEEEMMKAKLE ASSKTKELLEVHGVWLPPWLAVQLFRFQGLVNKHWNDHGQPTVELVYQKALEKKAKAAKWAEPHLETVKTKWIPTVKDKLVAVITHVEPHVRSLTAKSVG FYDTSKTTIEVHLIRVQEIVDPYFQEAKKFSKPYIDQIATVAEPHVNRIKVVVKPYTKKVARAYGSFLESATAYHNQVQGTVQDTLERHELTKPLATKEF VWFVVCNKRNY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G31340			myosin heavy chain-related (.1...		Lus10036424 [exp]	0	1
AT2G47070	SBP	SPL1	squamosa promoter binding prot...		Lus10010071 [exp]	1.4	0.8795
AT5G64740		PRC1, IXR2, E11...	PROCUSTE 1, ISOXABEN RESISTANT...		Lus10006161 [exp]	6.6	0.8603
AT1G10120	bHLH	bHLH074, CIB4	basic helix-loop-helix (bHLH) ...		Lus10006491 [exp]	8.7	0.8009
AT3G26370			O-fucosyltransferase family pr...		Lus10036875 [exp]	9.0	0.8491
AT5G48460			Actin binding Calponin homolog...		Lus10025865 [exp]	12.0	0.7948
AT3G61130		GAUT1, LGT1	galacturonosyltransferase 1 (....		Lus10036540 [exp]	13.0	0.8260
AT3G05520			Subunits of heterodimeric acti...		Lus10029890 [exp]	13.9	0.8219
AT2G27090			Protein of unknown function (D...		Lus10026763 [exp]	14.9	0.8105
AT4G16143		IMPA-2	importin alpha isoform 2 (.1.2...		Lus10041124 [exp]	16.5	0.8061
AT5G05170		IXR1, CEV1, ATH...	ISOXABEN RESISTANT 1, CONSTIT...		Lus10012198 [exp]	17.5	0.8262

Compare expression of checked genes

Lus10036424 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.