Plant FIBer expression Database

Lus10036425 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G71820 123 / 6e-33 SEC6 SEC6 (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10041100
[exp]
129 / 3e-35 AT1G71820 1221 / 0.0 SEC6 (.1.2)
Lus10026982
[exp]
128 / 9e-35 AT1G71820 1331 / 0.0 SEC6 (.1.2)
Lus10020177
[exp]
128 / 1e-34 AT1G71820 1257 / 0.0 SEC6 (.1.2)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.013G117400
[exp]
127 / 3e-34 AT1G71820 1345 / 0.0 SEC6 (.1.2)
Potri.019G088100
[exp]
126 / 5e-34 AT1G71820 1346 / 0.0 SEC6 (.1.2)
PFAM info
Representative CDS sequence
>Lus10036425 pacid=23174363 polypeptide=Lus10036425 locus=Lus10036425.g ID=Lus10036425.BGIv1.0 annot-version=v1.0
ATGGATCCCCTCATGAACTCCTATGTTGAGAGAATGCAGGCCACAACTAAGAAATGGTACCTAAACATACTGGAAGCTGACAAAGTACAGCCACCAAAGA
AAACAAAGGATGGGAAGCTGATTATTGGGGAGCAAGTTCAGATTGTTAGAGACAATAGCACTGATGCCATGCTCTACAGGATTTCATTGGCTATCATCCA
GCCTGAGGTAGTCGGAGAAGATCGTGGCATTGCGGGAGGGTATCCCTCGGAAGGATGCCAAAGAGGTGGTACAAGAATGCAAAGAGATATACGAGAATTC
GCTTGTGGATGGTCACCCTCCGAAGACAGGGTTCGTGTTCCCGAGGCTGAAATCCTTAGCTGTGTCCAAAGGAGGAGGATATATCTGGAGAAAGCTCACT
TAATATTTTTGCTTACACCTTCTGGGTTTCTGAGAAGCAGCAGGGTACGATCGATCCGAGTCATAACCACTCGGAGGTCTCCGCACACACCAGAACGGAA
TTGA
AA sequence
>Lus10036425 pacid=23174363 polypeptide=Lus10036425 locus=Lus10036425.g ID=Lus10036425.BGIv1.0 annot-version=v1.0
MDPLMNSYVERMQATTKKWYLNILEADKVQPPKKTKDGKLIIGEQVQIVRDNSTDAMLYRISLAIIQPEVVGEDRGIAGGYPSEGCQRGGTRMQRDIREF
ACGWSPSEDRVRVPEAEILSCVQRRRIYLEKAHLIFLLTPSGFLRSSRVRSIRVITTRRSPHTPERN

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G71820 SEC6 SEC6 (.1.2) Lus10036425
[exp]
0 1
AT2G37360 ABCG2 ATP-binding cassette G2, ABC-2... Lus10004274
[exp]
2.0 0.7384
AT2G37470 Histone superfamily protein (.... Lus10006484
[exp]
3.5 0.7038
AT5G11160 APT5 adenine phosphoribosyltransfer... Lus10002924
[exp]
15.3 0.6364
AT2G28420 GLYI8 glyoxylase I 8, Lactoylglutath... Lus10039579
[exp]
21.4 0.6873
AT4G21550 B3 HSI2-L2, VAL3 VP1/ABI3-like 3 (.1) Lus10014169
[exp]
23.7 0.6445
AT3G19610 Plant protein of unknown funct... Lus10012367
[exp]
35.9 0.6148
AT4G13340 LRX3 leucine-rich repeat/extensin 3... Lus10038631
[exp]
43.4 0.5592
AT4G24220 5[beta]-StR, 5[... VEIN PATTERNING 1, Δ4,5-s... Lus10018704
[exp]
43.8 0.5988
AT4G18160 KCO6, ATTPK3, A... Ca2+ activated outward rectify... Lus10004538
[exp]
68.0 0.5833
AT3G24650 B3 SIS10, ABI3 SUGAR INSENSITIVE 10, ABSCISIC... Lus10022820
[exp]
85.2 0.5762

Lus10036425 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.