Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G50230 635 / 0 Leucine-rich repeat protein kinase family protein (.1) AT5G43020 580 / 0 Leucine-rich repeat protein kinase family protein (.1) AT5G67200 436 / 7e-145 Leucine-rich repeat protein kinase family protein (.1) AT1G48480 296 / 3e-91 RKL1 receptor-like kinase 1 (.1) AT5G05160 280 / 3e-85 REDUCED IN LATERAL GROWTH1 (RUL1) REDUCED IN LATERAL GROWTH1, Leucine-rich repeat protein kinase family protein (.1) AT1G10850 277 / 6e-84 Leucine-rich repeat protein kinase family protein (.1) AT1G60630 276 / 1e-83 Leucine-rich repeat protein kinase family protein (.1) AT2G36570 272 / 9e-82 Leucine-rich repeat protein kinase family protein (.1) AT5G24100 264 / 2e-79 Leucine-rich repeat protein kinase family protein (.1) AT1G25320 246 / 8e-72 Leucine-rich repeat protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041101 [exp] 1112 / 0 AT5G67200 749 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10024803 [exp] 590 / 0 AT5G43020 678 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10018733 [exp] 590 / 0 AT5G43020 687 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10021131 [exp] 294 / 8e-90 AT2G36570 851 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10021383 [exp] 289 / 2e-88 AT3G08680 667 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10029075 [exp] 279 / 3e-84 AT1G10850 825 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10013073 [exp] 278 / 5e-84 AT1G10850 820 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10038828 [exp] 276 / 1e-83 AT4G23740 613 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10019113 [exp] 272 / 5e-82 AT5G58300 848 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G046900 [exp] 808 / 0 AT5G43020 575 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.005G141200 [exp] 766 / 0 AT5G67200 734 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.014G024400 [exp] 637 / 0 AT5G43020 628 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.010G121700 [exp] 347 / 3e-110 AT1G68400 760 / 0.0 leucine-rich repeat transmembrane protein kinase family protein (.1) Potri.019G131500 [exp] 313 / 8e-98 AT5G58300 860 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.003G136100 [exp] 281 / 7e-86 AT4G23740 769 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.003G068800 [exp] 281 / 3e-85 AT3G42880 471 / 6e-159 Leucine-rich repeat protein kinase family protein (.1) Potri.015G023500 [exp] 278 / 4e-84 AT4G23740 637 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.001G095200 [exp] 276 / 9e-84 AT4G23740 751 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.010G097200 [exp] 271 / 8e-82 AT1G10850 806 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat
Representative CDS sequence Show only first row Show all	>Lus10036426 pacid=23174522 polypeptide=Lus10036426 locus=Lus10036426.g ID=Lus10036426.BGIv1.0 annot-version=v1.0 ATGCTCTTAACCGACTTCTCCTCCGGCTCCATTTTCCTCTTCATCCTCCTCCTCCTCTTCTCTCCTTCCCCAACCACCACCCCTCCCCCATCCAGCACTG CCGCCCCCCAACCCGACGCCGTATCCCTCCTATCCTTCAAATCCAAGGCCGACTTGGATAACAAGCTCCTCTACTCCCTCACCGAGCGCTTCGATTATTG TCAATGGCATGGGGTCAAGTGTGCTCAAGGCCGCGTCGTCCGTGTCCTCCTCCAAGGTTTTGGCCTCCGTGGTGGTTTCCCTCCCGACACACTCACTCGT CTCGACCAGCTCCGAGTCCTTAGCCTCCGGGACAACTATCTCTCCGGCCCTATCCCTGACCTGTCTACTCTCGTCAATTTGAAGTCTCTCTTTCTCAATG GAAATTCCTTCTCTGGAACTTTCCCTCCTTCCATTTTGTTCCTCCACCGCCTAACCCTGCTTGATCTTTCACACAATACCCTCACTGGCCCAGTCCCGGC GGGGCTCTCCGAGTTGGACAGGCTGAATTCGCTCCGGCTCGAGTGGAATAGCTTCTCCGGACTCATCCCGCCACTTAACCAGTCGTTTCTCGTCAGCTTC AACATCTCCCGGAACAATCTCACGGGACGAATACCCTTCACCCCGACGCTTTCGCGGTTTGACACCACTGCGTTTCTGCTGAATCCGGATCTCTGCGGCG AGATTATCAACAAGGACTGCACATCCGTGAAGCCTCCCTTCTTTGAGCCATCCTCCTCCGCTCCAATTAATACTTCTTCTTCTTCTTCTCCGCTCAGTCA GAGTGCGGAGGCGCAAACTGGAGCGGCGTTTTCCACTCCGCCGAGGAAGCACCGTCGAGTCACTGCCATTCTTGCGTTCACGGTCGTCGTATCCTTGCTA GCTTTTGCCGGCATGTGTCTTTTCTTGGTTCAATCTAAGAGGAGCAGGAAGGACGACCAAGGAGCAGCAGCGAAACCCCCACCACCGGAGGTCCCTGAGA CAGCTCAACCAATGTCAGTAATGGGGAAATCGCAGGGGTTTGAAATTGCGGAGAGGAGTGGGAATTTGGTATACTGTGGAGGAGGAGGAGGGAGGGGAAA AGAAGGGTATAATCTGGAGCAGCTGATGAAAGCTTCGGCAGAGCTGCTGGGGAGAGGAAGCGTGGGAACAACGTACAAGGCAGTGCTGGATAACGGGGTG ATAATGACGGTGAAGAGGCTTGACGCTGGGAAGACGGCGATCACAGGGAGCCAAGCTTTCGAGAAACATATGGAGGTGGTGGGTGGGCTTAGGCACCCCA ATTTGGTTAGAGTTAGGGCATATTTCCAAGCTAAGGGAGAGCGGCTGGTGATCTTTGATTATCAACCCAATGGAAGCCTCTTCAATCTCATTCATGGTTC AAGATCAACAAGAGCAAAGCCGCTTCACTGGACGTCCTGCTTAAAGATAGCTGAAGATGTGGGTCAAGGTCTAGCGTACATACACCAAGCTTCACACCTG GTGCACGGCAACTTGAAGTCATCAAATGTCCTTCTGGGCCCGGATTTCGAGGCCTGCATTACGGACTACTGTCTTGCCGCACTTGCAGATACATCATGTA GTACAAGTGACGATCCGAATTCAGCAGCATGTAAAGCTCCAGAGACACGCAAGTCGAGCAGGGGTGCTACCCCAAAGTCTGATGTGTATGCATTTGGGGT GTTGTTATTGGAGCTGTTGACTGGGAAACACCCCTCGCAGCACCCTTACCTTATGCCTGCTGATCTGCTTGATTGGGTTAGGGCAACGAGGGAGGAATAT GACGGGCGGGAAGATAACCAGCTGGGAATGCTGACCGAAGTAGCGAGTGTGTGTAGCTTGACATCCCCGGAGCAGAGGCCTGCGATGTGGCAAGTGGTGA AGATGATACAGGAGATCAAAGACAGTGTGGTGGTAGAGGATAGTGTCAGTATTGGATATGTATAG
AA sequence Show only first row Show all	>Lus10036426 pacid=23174522 polypeptide=Lus10036426 locus=Lus10036426.g ID=Lus10036426.BGIv1.0 annot-version=v1.0 MLLTDFSSGSIFLFILLLLFSPSPTTTPPPSSTAAPQPDAVSLLSFKSKADLDNKLLYSLTERFDYCQWHGVKCAQGRVVRVLLQGFGLRGGFPPDTLTR LDQLRVLSLRDNYLSGPIPDLSTLVNLKSLFLNGNSFSGTFPPSILFLHRLTLLDLSHNTLTGPVPAGLSELDRLNSLRLEWNSFSGLIPPLNQSFLVSF NISRNNLTGRIPFTPTLSRFDTTAFLLNPDLCGEIINKDCTSVKPPFFEPSSSAPINTSSSSSPLSQSAEAQTGAAFSTPPRKHRRVTAILAFTVVVSLL AFAGMCLFLVQSKRSRKDDQGAAAKPPPPEVPETAQPMSVMGKSQGFEIAERSGNLVYCGGGGGRGKEGYNLEQLMKASAELLGRGSVGTTYKAVLDNGV IMTVKRLDAGKTAITGSQAFEKHMEVVGGLRHPNLVRVRAYFQAKGERLVIFDYQPNGSLFNLIHGSRSTRAKPLHWTSCLKIAEDVGQGLAYIHQASHL VHGNLKSSNVLLGPDFEACITDYCLAALADTSCSTSDDPNSAACKAPETRKSSRGATPKSDVYAFGVLLLELLTGKHPSQHPYLMPADLLDWVRATREEY DGREDNQLGMLTEVASVCSLTSPEQRPAMWQVVKMIQEIKDSVVVEDSVSIGYV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G67200			Leucine-rich repeat protein ki...		Lus10036426 [exp]	0	1
AT5G67200			Leucine-rich repeat protein ki...		Lus10041101 [exp]	1.0	0.9633
AT1G70370		PG2	polygalacturonase 2 (.1.2)		Lus10034881 [exp]	4.5	0.9218
AT5G65630		GTE7	global transcription factor gr...		Lus10039630 [exp]	7.7	0.8936
AT1G07820			Histone superfamily protein (....		Lus10015492 [exp]	8.7	0.9154
AT1G68400			leucine-rich repeat transmembr...		Lus10031965 [exp]	11.8	0.9132
AT1G66250			O-Glycosyl hydrolases family 1...		Lus10002295 [exp]	14.9	0.8979
AT2G42800		AtRLP29	receptor like protein 29 (.1)		Lus10010946 [exp]	15.0	0.9088
AT2G31220	bHLH	bHLH010	basic helix-loop-helix (bHLH) ...		Lus10007101 [exp]	15.4	0.8683
AT2G26520			unknown protein		Lus10021765 [exp]	15.7	0.9106
AT5G25590			Protein of unknown function (D...		Lus10037901 [exp]	16.9	0.9125

Compare expression of checked genes

Lus10036426 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.