Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G78070 589 / 0 Transducin/WD40 repeat-like superfamily protein (.1) AT1G36070 551 / 0 Transducin/WD40 repeat-like superfamily protein (.1.2) AT5G56190 485 / 1e-169 Transducin/WD40 repeat-like superfamily protein (.1.2) AT3G13340 481 / 5e-168 Transducin/WD40 repeat-like superfamily protein (.1.2) AT1G55680 481 / 6e-168 Transducin/WD40 repeat-like superfamily protein (.1) AT5G23430 62 / 4e-10 Transducin/WD40 repeat-like superfamily protein (.1.2) AT3G49660 61 / 6e-10 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT5G08390 60 / 2e-09 Transducin/WD40 repeat-like superfamily protein (.1) AT2G41500 53 / 3e-07 EMB2776, LIS LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) AT2G33340 53 / 3e-07 MAC3B MOS4-associated complex 3B (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041102 [exp] 842 / 0 AT1G78070 622 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10037252 [exp] 484 / 2e-169 AT1G55680 685 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10035667 [exp] 483 / 5e-169 AT1G55680 684 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10021975 [exp] 468 / 8e-163 AT5G56190 617 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10041268 [exp] 459 / 2e-159 AT3G13340 605 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10004167 [exp] 62 / 4e-10 AT2G41500 708 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Lus10021059 [exp] 61 / 1e-09 AT2G41500 706 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Lus10041007 [exp] 61 / 1e-09 AT5G23430 721 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10013452 [exp] 61 / 2e-09 AT1G50410 1003 / 0.0 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G168600 [exp] 655 / 0 AT1G78070 649 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.002G094100 [exp] 652 / 0 AT1G78070 655 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.006G000500 [exp] 503 / 7e-177 AT3G13340 683 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.011G168600 [exp] 498 / 1e-174 AT3G13340 736 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.001G471800 [exp] 478 / 7e-167 AT3G13340 736 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.014G147400 [exp] 468 / 4e-163 AT3G13340 605 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.002G233700 [exp] 468 / 6e-163 AT3G13340 597 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.016G000800 [exp] 161 / 1e-47 AT5G56190 201 / 8e-64 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.014G147500 [exp] 109 / 3e-28 AT3G13340 124 / 2e-34 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.010G255400 [exp] 63 / 3e-10 AT5G08390 927 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Lus10036428 pacid=23174484 polypeptide=Lus10036428 locus=Lus10036428.g ID=Lus10036428.BGIv1.0 annot-version=v1.0 ATGGCTGAATTCCATAATAATGACCTGGAGTACGTTGTTGATGACTACTACGACTCCGATTTCGAAGAGGAGCCACAGGTTCAAAAGTGTGACGAGTTGG AGTCTCTGGACTCGGACTTTGAAGACGATTTTGAGTTTAGCAAGTCGAAGACGGATACAACTGCTTTCGAGTTTAGGCGTGGGAAGGATATTCAAGGGAT TCCATGGGAGAGGCTGAATTACACTAGGGATAAGTACCGGGAGACTAGATTAAAGCAGTACAAGAACTACGAGAACCTATCTCCTTCTCATGAAGAGATC AATAAGGAATGTTTGCAAGTGGACAAGGAAAAGACATTTTATGACTTCCAGTTAAATACAAGGCTCGTCAAATCGACAATTGTGCATTTTCAGGCTTCAT CTGTCTATTTTAATATTATAAGCAGGCTGGAAGTAGTATCTGAGCAGCTACCGGGATTAAGGATACGTTATTCTATGCTGAGGAATCTTTTGTGGGCAAC ATCGAAGCATGATGTCTTCCTTGTGGGCGACTATTCTGTAATGCATTGGTCTGCTTTGGCAAGAAAAGGAAAGGAAGTCCTCAATGTGGCCAAACCGGTA GTTCCTACTTTGAAACGGCCAGGATTGCTGACTCAGTCCCTTTCGCGGGTGCAAATCAGTTCCATGGCTGTAAAAGAGAACATATTAGTAGCAGGTGGCT TTCAAGGGGAGCTCATTTGCAAGTATCTGGATCATCCTGGAGCTGCATTCTGCACGAAACTGACAACGCATGAAAATGCAATTACCAATGCGGTTGATAT CTATTGCAGCCCGAGCGGCTCAAAGAGGATAATGGCAGCAAATAACGATGCACAGATCCGAATTATTGACACAGAGAGTTTTACATGCCTAAACCAGTTC TCTTTCAATTGGTCCATAAATAGCACGTCTGTTAGCCCGGACGGAAAGCTGGTAGCAGTCCTCGGGGACAGTGTCGACTGCCTGATGCTGGAGGCCCAGT CCGGGAAGGTAACTACTAACCTCAAAGGCCACGTGGACTATTCATTCTCATCCGCATGGCATCCGGACGGCCGAATATTAGCCACTAGCAACCAAGACAC CACATGCAGGATATGGGACATCAGAAACCCATCCAGGTCCCTCGCTGTTCTCAAGGGAAACATGGGTGCTATCAGAGGCCTCAAGTTCACGTCGGATGGT TCGTTCTTGGGTATGCAAGAGCCCGCAGACTTCATCCACGTGTTCGATGTTGAATCCGGGTACGTCAAGTGCCAGGAGATCGACCTGTTTGGGGAGATCG CCGGGATCTCCTTCAGCCCCGATTCGGAGTCTTTGTTTGTTGGCATAGCTGATCGTACTTATGGGAGTCTGTTGGAGTTGGGTCGGAGGTGTTGCGTCAG TCACTTGGACTCCTTTCATTAG
AA sequence Show only first row Show all	>Lus10036428 pacid=23174484 polypeptide=Lus10036428 locus=Lus10036428.g ID=Lus10036428.BGIv1.0 annot-version=v1.0 MAEFHNNDLEYVVDDYYDSDFEEEPQVQKCDELESLDSDFEDDFEFSKSKTDTTAFEFRRGKDIQGIPWERLNYTRDKYRETRLKQYKNYENLSPSHEEI NKECLQVDKEKTFYDFQLNTRLVKSTIVHFQASSVYFNIISRLEVVSEQLPGLRIRYSMLRNLLWATSKHDVFLVGDYSVMHWSALARKGKEVLNVAKPV VPTLKRPGLLTQSLSRVQISSMAVKENILVAGGFQGELICKYLDHPGAAFCTKLTTHENAITNAVDIYCSPSGSKRIMAANNDAQIRIIDTESFTCLNQF SFNWSINSTSVSPDGKLVAVLGDSVDCLMLEAQSGKVTTNLKGHVDYSFSSAWHPDGRILATSNQDTTCRIWDIRNPSRSLAVLKGNMGAIRGLKFTSDG SFLGMQEPADFIHVFDVESGYVKCQEIDLFGEIAGISFSPDSESLFVGIADRTYGSLLELGRRCCVSHLDSFH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G78070			Transducin/WD40 repeat-like su...		Lus10036428 [exp]	0	1
AT1G09920			TRAF-type zinc finger-related ...		Lus10028213 [exp]	5.7	0.8764
AT4G39952			Pentatricopeptide repeat (PPR)...		Lus10010688 [exp]	5.7	0.9068
AT5G01260			Carbohydrate-binding-like fold...		Lus10002495 [exp]	6.5	0.9086
AT1G11330			S-locus lectin protein kinase ...		Lus10015422 [exp]	7.7	0.8967
AT4G12010			Disease resistance protein (TI...		Lus10019654 [exp]	8.8	0.8934
					Lus10042562 [exp]	10.5	0.8864
AT4G03115			Mitochondrial substrate carrie...		Lus10024769 [exp]	11.5	0.8976
AT2G17787			unknown protein		Lus10013567 [exp]	12.7	0.8879
AT1G76480			unknown protein		Lus10006035 [exp]	12.8	0.8964
					Lus10037274 [exp]	13.2	0.8659

Compare expression of checked genes

Lus10036428 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.