Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G05840 534 / 0 Eukaryotic aspartyl protease family protein (.1) AT3G02740 533 / 0 Eukaryotic aspartyl protease family protein (.1) AT5G36260 528 / 0 Eukaryotic aspartyl protease family protein (.1) AT1G65240 514 / 0 Eukaryotic aspartyl protease family protein (.1) AT5G22850 345 / 6e-114 Eukaryotic aspartyl protease family protein (.1) AT2G36670 313 / 2e-101 Eukaryotic aspartyl protease family protein (.1.2) AT1G08210 312 / 2e-101 Eukaryotic aspartyl protease family protein (.1) AT3G42550 150 / 3e-40 Eukaryotic aspartyl protease family protein (.1) AT5G43100 144 / 3e-37 Eukaryotic aspartyl protease family protein (.1) AT3G25700 138 / 9e-36 Eukaryotic aspartyl protease family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041103 [exp] 917 / 0 AT3G02740 548 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10020201 [exp] 754 / 0 AT5G36260 550 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10027001 [exp] 737 / 0 AT5G36260 546 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10021485 [exp] 536 / 0 AT1G05840 723 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10021397 [exp] 336 / 2e-110 AT5G22850 677 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10005356 [exp] 332 / 9e-109 AT5G22850 669 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10014391 [exp] 319 / 9e-104 AT2G36670 598 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Lus10027732 [exp] 312 / 2e-101 AT2G36670 634 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Lus10035556 [exp] 311 / 5e-95 AT2G36670 623 / 0.0 Eukaryotic aspartyl protease family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G054900 [exp] 680 / 0 AT3G02740 572 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.014G146400 [exp] 555 / 0 AT1G05840 758 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.009G001700 [exp] 337 / 5e-111 AT5G22850 711 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.001G213600 [exp] 330 / 2e-108 AT5G22850 704 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.006G118800 [exp] 315 / 3e-102 AT2G36670 585 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Potri.016G096700 [exp] 293 / 1e-93 AT2G36670 578 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Potri.015G053300 [exp] 140 / 5e-36 AT1G49050 611 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Potri.014G020200 [exp] 140 / 9e-36 AT5G43100 807 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.002G081400 [exp] 134 / 3e-34 AT1G44130 449 / 1e-156 Eukaryotic aspartyl protease family protein (.1) Potri.005G144600 [exp] 134 / 2e-33 AT5G43100 729 / 0.0 Eukaryotic aspartyl protease family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0129 [flax] [poplar] Peptidase_AA PF00026 [flax] [poplar] Asp Eukaryotic aspartyl protease
Representative CDS sequence Show only first row Show all	>Lus10036430 pacid=23174480 polypeptide=Lus10036430 locus=Lus10036430.g ID=Lus10036430.BGIv1.0 annot-version=v1.0 ATGGATCTGAGGAGGAGGCTCCTCCTGCCGTCGGCCTTGTTGCTGTTGTTCTCCTTCACTTTAGCCTCCGCCAACCTGGTTTTCCACGTTCATCACAAGT TCGCGGGCCGTGAGCGCCAGCTCAGTGCTTTCAGAGCTCATGATCTCCAACGCCACCGTCGATCCCTCGCTGCCGTCGACATCCCCCTCGGTGGAACTGG AGATCCTACCACTGTCGGCCTCTACTATACGAAAATTGGGCTTGGGACTCCTCCAAAAGACTATTATGTGCAGGTTGACACTGGAAGCGATACTATGTGG GTGAACTGTGTGGAATGTAACAAGTGTCCTACAAGAAGTGAACTCGGGGTAAAACTGACGTTGTTTGATCCGAAAAGCTCTTCATCTGCAACTAGGGTTT CTTGTGACGATGAGTTCTGTGTTTCAACATTCAGTCGCATGATGGATGGGTGTACAAACGCTTTGCCTTGCCAATACAGTATCACTTATGGTGATGGAAG TGAGACAGCGGGATTTTATGTCAGGGACAACGTACAACTTGATCAAGTTACTGGAAATCTTCAAACTGGAACCTTGAATGGGTCTATTGTATTTGGGTGC GCGGCACAACAATCTGGCCAGTTAGGTACACCCACTGAAGCACTTGATGGGATCGTTGGTTTTGGACAGGCAAATTCGTCCTTGTTTTCACAACTTGCTG CTTCTGGAAAGGTCAAGCGAGTGTTTTCACATTGCCTAGACAGTGTAAAGGGAGGTGGAATTTTTGCAATTGGTGAATTGGTGGCTCCAAAAGTGCCCAC AACTCCCATGATACCCAACCAGGCCCATTACAACGTGGCTCTGAAGGATGTTGAAGTGGGCGGTGAAGTGCTAGATCTTCCTACCGACATCTTCGACACG GGAGATAGAAAAGGAACTATAATTGATAGTGGTACAACGTTGGCATACCTTCCGGAGCCGGTTTATGAATCAATGATGAGTAAGATTCTTTCTAGGCAAC CTGGAATGAAGTTGCACACTGTTGAAGAGCAGTTCTCTTGCTTTTATTACAACGGAAAAGTGGACGATGACTTCCCTGTGGTGACGTTTCACTTTGAAGA TTCACTCAAGCTGGCAGTGCATCCTCATGACTATATTTTTCAATCTAAAGAAGACGAATGGTGCTTCGGTTGGCAGAATAGCGGGGCACAATCCAAAGAC AGTAGTGGCATGATTCTTCTAGGAGATCTTGTGGTCTCAAACAAGCTTGTTGTATACGATCTCGTGAATCAAGCCATTGGATGGACAGACTACAACTGCT CTTCAAGCATCAAAATAAAGGACGAGAAGACGGGAGTGGTTTATCAAGTGGGCGCGAAGGATATATCGGCAGGCCGGGAGCTGAACCCAGTAAGAAACCT GACATTCTTCTTGTTACTATTTGCAGTATTGTATAGATTCTTTTGA
AA sequence Show only first row Show all	>Lus10036430 pacid=23174480 polypeptide=Lus10036430 locus=Lus10036430.g ID=Lus10036430.BGIv1.0 annot-version=v1.0 MDLRRRLLLPSALLLLFSFTLASANLVFHVHHKFAGRERQLSAFRAHDLQRHRRSLAAVDIPLGGTGDPTTVGLYYTKIGLGTPPKDYYVQVDTGSDTMW VNCVECNKCPTRSELGVKLTLFDPKSSSSATRVSCDDEFCVSTFSRMMDGCTNALPCQYSITYGDGSETAGFYVRDNVQLDQVTGNLQTGTLNGSIVFGC AAQQSGQLGTPTEALDGIVGFGQANSSLFSQLAASGKVKRVFSHCLDSVKGGGIFAIGELVAPKVPTTPMIPNQAHYNVALKDVEVGGEVLDLPTDIFDT GDRKGTIIDSGTTLAYLPEPVYESMMSKILSRQPGMKLHTVEEQFSCFYYNGKVDDDFPVVTFHFEDSLKLAVHPHDYIFQSKEDEWCFGWQNSGAQSKD SSGMILLGDLVVSNKLVVYDLVNQAIGWTDYNCSSSIKIKDEKTGVVYQVGAKDISAGRELNPVRNLTFFLLLFAVLYRFF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G02740			Eukaryotic aspartyl protease f...		Lus10036430 [exp]	0	1
AT3G02740			Eukaryotic aspartyl protease f...		Lus10041103 [exp]	2.2	0.8477
AT1G14000		VIK	VH1-interacting kinase (.1)		Lus10030435 [exp]	2.8	0.8550
AT4G28880		CKL3	casein kinase I-like 3 (.1)		Lus10043233 [exp]	3.5	0.8565
AT5G15880			unknown protein		Lus10003057 [exp]	9.1	0.7687
AT3G55960			Haloacid dehalogenase-like hyd...		Lus10014844 [exp]	9.4	0.8143
AT3G08790			ENTH/VHS/GAT family protein (....		Lus10011689 [exp]	10.3	0.8641
AT2G26570		WEB1	WEAK CHLOROPLAST MOVEMENT UNDE...		Lus10037354 [exp]	11.0	0.8044
AT5G25265			unknown protein		Lus10041028 [exp]	12.6	0.8373
AT5G17290		ATG5, APG5, ATA...	AUTOPHAGY 5, autophagy protein...		Lus10020737 [exp]	13.4	0.8440
AT4G08180		ORP1C	OSBP(oxysterol binding protein...		Lus10025635 [exp]	14.2	0.8119

Compare expression of checked genes

Lus10036430 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.