Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G47390 848 / 0 PHS1 PHOTOSENSITIVE 1, cytidine/deoxycytidylate deaminase family protein (.1.2) AT4G20960 84 / 4e-17 Cytidine/deoxycytidylate deaminase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041104 [exp] 1043 / 0 AT3G47390 791 / 0.0 PHOTOSENSITIVE 1, cytidine/deoxycytidylate deaminase family protein (.1.2) Lus10026832 [exp] 930 / 0 AT3G47390 876 / 0.0 PHOTOSENSITIVE 1, cytidine/deoxycytidylate deaminase family protein (.1.2) Lus10020208 [exp] 929 / 0 AT3G47390 885 / 0.0 PHOTOSENSITIVE 1, cytidine/deoxycytidylate deaminase family protein (.1.2) Lus10037850 [exp] 98 / 1e-21 AT4G20960 430 / 1e-149 Cytidine/deoxycytidylate deaminase family protein (.1) Lus10030388 [exp] 97 / 2e-21 AT4G20960 422 / 7e-147 Cytidine/deoxycytidylate deaminase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G054000 [exp] 881 / 0 AT3G47390 935 / 0.0 PHOTOSENSITIVE 1, cytidine/deoxycytidylate deaminase family protein (.1.2) Potri.002G158800 [exp] 99 / 7e-22 AT4G20960 422 / 6e-146 Cytidine/deoxycytidylate deaminase family protein (.1) Potri.014G083000 [exp] 67 / 2e-12 AT4G20960 272 / 6e-91 Cytidine/deoxycytidylate deaminase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0387 [flax] [poplar] DHFred PF01872 [flax] [poplar] RibD_C RibD C-terminal domain CL0109 [flax] [poplar] CDA PF00383 [flax] [poplar] dCMP_cyt_deam_1 Cytidine and deoxycytidylate deaminase zinc-binding region CL0109 [flax] [poplar] PF08719 [flax] [poplar] NADAR NADAR domain
Representative CDS sequence Show only first row Show all	>Lus10036431 pacid=23174545 polypeptide=Lus10036431 locus=Lus10036431.g ID=Lus10036431.BGIv1.0 annot-version=v1.0 ATGCTGATAGCCGCCGTCGCCCGTAAAGAAAAACGTCTGAAATTCAATCCTGTAAGCAGAACGGGAACCAGAGAAATGAGCGCTTTATCCATCGCCGGCA ATCTCCTCCACGGAAAGGATGCAGCCTACATGAAACGAGCGGCGGAGCTTGCCGACAGCTCAGCTGGACTCACTTCTCCCCATCCCAATTTCGGCTGCGT CCTAATCACTCCCTCCGGAAATCTCGTCGGAGAAGGCTATCTCTACGCCCAGGGCACCAAGCCGGCCGAAGTTCAGGCAGTCGAGTCCGCCAGCCATTTG AGCAAAGGCGCAACCGCATATTTGAATCTCGAGCCAGGGGATTGCCATGGAGATCCAGCTGCCGTCTCAGCTCTTGTCCAGGCTGGAGTCGCGAGAGTGG TGGTCGGTGTCAGGCACCCGTTAAAGCATCTTCAAGGCCGTGCTCTTCGTGCTCTTCGGAATCAAGGTTTGCAGGTTGATGTTCTAGGAGAGGATATGGA GAGTAAGTTGATCGAGGAAGCTCGGAAATCCTGCCTTCTAGTGAATGCTCCTTTGATGTACAGAGCTGCTTCCAGGGTGCCATTTTCGTTTCTCAAGTAT GCCATCACTCTTGATGGAAAAATTGCCGCAAGTACTGGACATGCAGCATGGATTAGCAGCAGGAAGTCGAGGAATCGAGTTTTCGAGCTTCGTGGTAGAA GTGATGCTGTTATTGTTGGAGGGAACACTGTACGTAGAGACAATCCGCGATTGACTGCTCGACATGGTGGAGATCATATGCCGTTACGGGTTGTAATGAG TCAATCTCTTGATCTGCCAGAGGAAGCGAATCTTTGGGATGTCTCTCAGGTGCAAACTATAGTTGTGACTCAGAGGGGTGCAAGAAGGAGTTTCCAGAAG GTACTAGCATCGAAAGGAGTCAAAGTTGTCGAGTTCGACATCCTCAGTCCGAGAGAAACCATGGAGTATTTCCATGGCCGTGGGTATCTTTCTGTTATGT GGGAGTGTGGTGGAACCCTTGCTGCTTCTGCTATTTCAGCTGGCGTGATACACAAGGTTTATGCATTTGTTGCCCCAAAGATAATCGGAGGGAAGAATGC ACCAACCCCGGTTGGTGAACTCGGAATGGTCGAGATGTCTCAGGCTCTGGATCTAATCGATGTTAGCTATGAGCAGATCGGTCCAGACATGCTTATCGGA GGGTATCTGCAGCTAATACCGGACCCTACACCGGCTATCCCATCATCGGATGAAACATTGGCCATCGATCCCACTGTGAACCTGCACGAATCAAACATCA TATTTTTCTACAAAGCATGGGATCCTTACAGAGCCTTCTCGAATTTTTCTTATCATAAAATCGAGATGACGGAAGAGGATGGTGGTTTTGAAACATGGTC GAGCGTAGAGCATTATTACCAGGCCTGCAAGTTTACTGGAGTCAGTGATCCGGAAGCGAACGACTGCATCGAGAAGATCGAGTGTGCAAAGAGTCCAGAA CAAGCTGCAAAGTTCGGTCGGTCAATGCAAAGGCTGCATCCTAACATGGTGAGACTGGACTGGGAGAATGTGAAGATTGATGTCATGTACAGTGCGTTAA GGAGCAAGTTCTCGAGATATCGTCATTTGAAATCGATGCTGCTCGCGACAGCTGGATCCGTTCTTGTCGAAGCTTCGCCCCACGATCTGTTTTGGGGCGG AGGAAGGGAAGGGGAGGGCCTCAATTACCTGGGTAGGCTGTTGATGCAACTAAGAGCAGAGTTTCTTGGTGAATCTTCTGCACCCCAGTGA
AA sequence Show only first row Show all	>Lus10036431 pacid=23174545 polypeptide=Lus10036431 locus=Lus10036431.g ID=Lus10036431.BGIv1.0 annot-version=v1.0 MLIAAVARKEKRLKFNPVSRTGTREMSALSIAGNLLHGKDAAYMKRAAELADSSAGLTSPHPNFGCVLITPSGNLVGEGYLYAQGTKPAEVQAVESASHL SKGATAYLNLEPGDCHGDPAAVSALVQAGVARVVVGVRHPLKHLQGRALRALRNQGLQVDVLGEDMESKLIEEARKSCLLVNAPLMYRAASRVPFSFLKY AITLDGKIAASTGHAAWISSRKSRNRVFELRGRSDAVIVGGNTVRRDNPRLTARHGGDHMPLRVVMSQSLDLPEEANLWDVSQVQTIVVTQRGARRSFQK VLASKGVKVVEFDILSPRETMEYFHGRGYLSVMWECGGTLAASAISAGVIHKVYAFVAPKIIGGKNAPTPVGELGMVEMSQALDLIDVSYEQIGPDMLIG GYLQLIPDPTPAIPSSDETLAIDPTVNLHESNIIFFYKAWDPYRAFSNFSYHKIEMTEEDGGFETWSSVEHYYQACKFTGVSDPEANDCIEKIECAKSPE QAAKFGRSMQRLHPNMVRLDWENVKIDVMYSALRSKFSRYRHLKSMLLATAGSVLVEASPHDLFWGGGREGEGLNYLGRLLMQLRAEFLGESSAPQ

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G47390		PHS1	PHOTOSENSITIVE 1, cytidine/deo...		Lus10036431 [exp]	0	1
AT1G64810		APO1	ACCUMULATION OF PHOTOSYSTEM ON...		Lus10039122 [exp]	1.4	0.8741
AT3G61870			unknown protein		Lus10010112 [exp]	10.2	0.8866
AT2G44760			Domain of unknown function (DU...		Lus10029792 [exp]	13.0	0.8644
AT2G05620		PGR5	proton gradient regulation 5 (...		Lus10023734 [exp]	16.1	0.8711
AT1G74640			alpha/beta-Hydrolases superfam...		Lus10024219 [exp]	18.3	0.8726
AT3G16000		MFP1	MAR binding filament-like prot...		Lus10025768 [exp]	19.4	0.8684
AT2G03420			unknown protein		Lus10037118 [exp]	25.7	0.8686
AT5G02120		PDE335, OHP	PIGMENT DEFECTIVE 335, one hel...		Lus10003965 [exp]	32.4	0.8669
AT4G22890		PGR5-LIKEA, PGR...	PGR5-LIKE A (.1.2.3.4.5)		Lus10014135 [exp]	32.4	0.8701
AT1G60950		FED A, ATFD2, F...	FERREDOXIN 2, 2Fe-2S ferredoxi...		Lus10001369 [exp]	34.4	0.8671

Compare expression of checked genes

Lus10036431 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.