Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G18530 372 / 4e-127 Protein of unknown function (DUF707) (.1) AT4G12840 369 / 1e-125 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2) AT1G11170 315 / 6e-104 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2) AT1G61240 305 / 2e-100 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2), Protein of unknown function (DUF707) (.3), Protein of unknown function (DUF707) (.4) AT1G08040 226 / 2e-70 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2) AT3G27470 224 / 2e-69 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2) AT1G67850 222 / 2e-68 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2) AT2G28310 220 / 6e-68 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2), Protein of unknown function (DUF707) (.3) AT1G24570 220 / 6e-68 Protein of unknown function (DUF707) (.1) AT1G13000 220 / 9e-68 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041107 [exp] 636 / 0 AT4G12840 416 / 7e-145 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2) Lus10006728 [exp] 315 / 3e-104 AT1G61240 533 / 0.0 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2), Protein of unknown function (DUF707) (.3), Protein of unknown function (DUF707) (.4) Lus10038303 [exp] 303 / 1e-99 AT1G61240 507 / 2e-179 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2), Protein of unknown function (DUF707) (.3), Protein of unknown function (DUF707) (.4) Lus10018456 [exp] 289 / 4e-94 AT1G61240 504 / 1e-178 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2), Protein of unknown function (DUF707) (.3), Protein of unknown function (DUF707) (.4) Lus10002141 [exp] 304 / 8e-94 AT1G53140 1204 / 0.0 Dynamin related protein 5A (.1) Lus10011228 [exp] 285 / 2e-90 AT1G61240 507 / 4e-177 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2), Protein of unknown function (DUF707) (.3), Protein of unknown function (DUF707) (.4) Lus10032090 [exp] 236 / 1e-73 AT3G27470 564 / 0.0 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2) Lus10011414 [exp] 234 / 4e-73 AT1G67850 611 / 0.0 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2) Lus10006472 [exp] 232 / 2e-72 AT1G67850 598 / 0.0 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G053000 [exp] 414 / 2e-143 AT4G18530 444 / 4e-156 Protein of unknown function (DUF707) (.1) Potri.004G227700 [exp] 358 / 2e-121 AT4G18530 466 / 1e-164 Protein of unknown function (DUF707) (.1) Potri.003G003100 [exp] 354 / 4e-120 AT4G18530 480 / 4e-170 Protein of unknown function (DUF707) (.1) Potri.014G175800 [exp] 345 / 2e-116 AT4G12840 482 / 1e-170 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2) Potri.011G045300 [exp] 323 / 9e-108 AT1G61240 534 / 0.0 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2), Protein of unknown function (DUF707) (.3), Protein of unknown function (DUF707) (.4) Potri.004G036800 [exp] 312 / 2e-103 AT1G61240 535 / 0.0 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2), Protein of unknown function (DUF707) (.3), Protein of unknown function (DUF707) (.4) Potri.009G011000 [exp] 231 / 4e-72 AT2G28310 608 / 0.0 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2), Protein of unknown function (DUF707) (.3) Potri.008G185600 [exp] 231 / 4e-72 AT1G67850 610 / 0.0 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2) Potri.010G047200 [exp] 229 / 4e-71 AT1G67850 581 / 0.0 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2) Potri.017G065200 [exp] 223 / 1e-68 AT3G27470 605 / 0.0 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05212 [flax] [poplar] DUF707 Protein of unknown function (DUF707)
Representative CDS sequence Show only first row Show all	>Lus10036434 pacid=23174468 polypeptide=Lus10036434 locus=Lus10036434.g ID=Lus10036434.BGIv1.0 annot-version=v1.0 ATGGATGGAGGATCACTACCGCCATTGATTCACGATGCTGCAGATATCCAGATCACCTGCGGATTCAAAACCCAGATCATCATGTCCTCGAAGCGTCTTC CCCACTGCTTCAATCGTTCTTGTTGTATTGTTCTTCGTCGGCAGCGTGGTGCTTGTTCCCGTCAAGAAACAGGTAATACCCTGGCGAATTTCTTGGAGCT CGTACGTTTGATACTGACAAGATCAACAGTAGTAGAGAGTTTTGGGAATCTAAATGCTACCAATTGTGAGGACAAAACCAAAAGACCAGATGGAAGTGAG ACATTGCCACTAGGAATTATTAAAAAGACTTCAAATTTGCAGATGAGACCCTTATGGGGCAAAGTTGCAAAAGTAAGAACACAACAAAATCTCTATGCAG CAGCTGTTGGGATTCAGCAGAAAGACCTTGTAAATAAGATGGTCACCAAGTTCCTTTCGAGCGATTTCACGGTGATGCTGTTCCACTACGATGGTTCTGT CGATGAGTGGAGCGAGTTTAGCTGGAGCTCGAGTGTCGTTCATGTCTCTGCACTTAATCAGACCAAATGGCAAGTGTCGCCTTTTTGCATTCCTTCCACA TCTTTCATACCAAAGACGGGGTGGTTTGCGAAGCGGTTCATGCACCCGGATATAGTCGCGGAGTACGACTACATATTCTTATGGGACGAGGACATCGGAG TTGACCATTTCGATCCAACCAGGTACATTTCGATCGTTGCCAATGAAGGTCTAGAGATATCACAGCCAGCACTGGAGATTGGGAAATCAGAGATACATCA GCAGATCACTGCTCGAGCCAATTCTCGAGTCCACAGACGAATGTACAAGGCAGGGTCTTGTGACGGGAGTAGCAATGCGCCACCCTGTACCGGGTGGGTG GAGATGATGACTCCTGTTTTCTCCAGAAACGCCTGGCGTTGCGTTTGGTACATGATCCAGAACGACTTGATTCATGCATGGGGTCTGGATTATCGGCTTG GCTACTGTGCTCAGGGTGATCGAACGAAAAACATTGGAGTTGTAGATGCAGAGTATGTAACTCATTACGGTCGTCCTACACTCGGAGGAGGAGGCTCGAA TAAGGCGTCTCCTGCCGGGCAACAAAGAGACCCACATGAACTAGACCCCAGAATCGAAGTGAGAAGGCAATCATACAACGAATACAAAGTGTTTAAACGT CGATGGGCAAAAGCAGCCGAGCAGGATACATGTTGGATTGATCCGTATGAGCAATGA
AA sequence Show only first row Show all	>Lus10036434 pacid=23174468 polypeptide=Lus10036434 locus=Lus10036434.g ID=Lus10036434.BGIv1.0 annot-version=v1.0 MDGGSLPPLIHDAADIQITCGFKTQIIMSSKRLPHCFNRSCCIVLRRQRGACSRQETGNTLANFLELVRLILTRSTVVESFGNLNATNCEDKTKRPDGSE TLPLGIIKKTSNLQMRPLWGKVAKVRTQQNLYAAAVGIQQKDLVNKMVTKFLSSDFTVMLFHYDGSVDEWSEFSWSSSVVHVSALNQTKWQVSPFCIPST SFIPKTGWFAKRFMHPDIVAEYDYIFLWDEDIGVDHFDPTRYISIVANEGLEISQPALEIGKSEIHQQITARANSRVHRRMYKAGSCDGSSNAPPCTGWV EMMTPVFSRNAWRCVWYMIQNDLIHAWGLDYRLGYCAQGDRTKNIGVVDAEYVTHYGRPTLGGGGSNKASPAGQQRDPHELDPRIEVRRQSYNEYKVFKR RWAKAAEQDTCWIDPYEQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G12840			Protein of unknown function (D...		Lus10036434 [exp]	0	1
AT5G28910			unknown protein		Lus10008196 [exp]	1.0	0.8207
AT4G30080	ARF	ARF16	auxin response factor 16 (.1)		Lus10021467 [exp]	16.2	0.7655
AT1G12260	NAC	ANAC007, VND4, ...	VASCULAR RELATED NAC-DOMAIN PR...		Lus10032238 [exp]	22.9	0.7951
AT3G27960			Tetratricopeptide repeat (TPR)...		Lus10008786 [exp]	29.3	0.7763
AT5G51710		ATKEA5, KEA5	K+ efflux antiporter 5, ARABID...		Lus10031687 [exp]	32.7	0.7299
AT1G02120		VAD1	VASCULAR ASSOCIATED DEATH1, GR...		Lus10042913 [exp]	34.3	0.7564
AT3G23590		MED33A, RFR1	REF4-related 1 (.1)		Lus10034021 [exp]	35.5	0.7391
AT3G23160			Protein of unknown function (D...		Lus10022201 [exp]	39.3	0.6455
AT3G09920		PIP5K9	phosphatidyl inositol monophos...		Lus10023909 [exp]	39.7	0.7244
AT2G43120			RmlC-like cupins superfamily p...		Lus10019561 [exp]	46.0	0.7455

Compare expression of checked genes

Lus10036434 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.