Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G17370 374 / 3e-122 UBP1B oligouridylate binding protein 1B (.1.2) AT3G14100 356 / 5e-115 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT4G38670 346 / 2e-113 Pathogenesis-related thaumatin superfamily protein (.1.2.3) AT1G54080 339 / 2e-108 UBP1A oligouridylate-binding protein 1A (.1.2) AT1G75800 294 / 1e-92 Pathogenesis-related thaumatin superfamily protein (.1) AT4G36010 293 / 1e-92 Pathogenesis-related thaumatin superfamily protein (.1.2) AT2G17860 288 / 1e-91 Pathogenesis-related thaumatin superfamily protein (.1) AT1G20030 284 / 3e-89 Pathogenesis-related thaumatin superfamily protein (.1.2) AT4G24180 249 / 2e-76 ATTLP1 THAUMATIN-LIKE PROTEIN 1 (.1) AT4G38660 242 / 7e-73 Pathogenesis-related thaumatin superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041109 [exp] 508 / 1e-174 AT1G17370 378 / 3e-129 oligouridylate binding protein 1B (.1.2) Lus10011924 [exp] 371 / 9e-121 AT1G17370 578 / 0.0 oligouridylate binding protein 1B (.1.2) Lus10008130 [exp] 368 / 1e-119 AT1G17370 664 / 0.0 oligouridylate binding protein 1B (.1.2) Lus10027641 [exp] 356 / 4e-115 AT1G17370 569 / 0.0 oligouridylate binding protein 1B (.1.2) Lus10013167 [exp] 309 / 9e-98 AT1G17370 575 / 0.0 oligouridylate binding protein 1B (.1.2) Lus10017265 [exp] 288 / 1e-90 AT1G75800 390 / 2e-136 Pathogenesis-related thaumatin superfamily protein (.1) Lus10034534 [exp] 285 / 2e-89 AT1G75800 376 / 5e-131 Pathogenesis-related thaumatin superfamily protein (.1) Lus10028448 [exp] 281 / 4e-88 AT4G36010 332 / 9e-115 Pathogenesis-related thaumatin superfamily protein (.1.2) Lus10033136 [exp] 281 / 4e-88 AT1G75800 375 / 8e-131 Pathogenesis-related thaumatin superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G279600 [exp] 482 / 5e-164 AT1G17370 469 / 9e-165 oligouridylate binding protein 1B (.1.2) Potri.018G002300 [exp] 466 / 1e-157 AT1G17370 461 / 1e-161 oligouridylate binding protein 1B (.1.2) Potri.001G166100 [exp] 391 / 1e-128 AT1G17370 622 / 0.0 oligouridylate binding protein 1B (.1.2) Potri.003G069000 [exp] 385 / 3e-126 AT1G17370 621 / 0.0 oligouridylate binding protein 1B (.1.2) Potri.009G132200 [exp] 360 / 4e-118 AT4G38670 410 / 2e-145 Pathogenesis-related thaumatin superfamily protein (.1.2.3) Potri.006G139300 [exp] 363 / 8e-118 AT1G17370 580 / 0.0 oligouridylate binding protein 1B (.1.2) Potri.005G112700 [exp] 319 / 7e-103 AT4G36010 372 / 3e-130 Pathogenesis-related thaumatin superfamily protein (.1.2) Potri.005G240900 [exp] 287 / 2e-90 AT1G75800 398 / 7e-140 Pathogenesis-related thaumatin superfamily protein (.1) Potri.002G020500 [exp] 287 / 3e-90 AT1G75800 404 / 7e-142 Pathogenesis-related thaumatin superfamily protein (.1) Potri.005G241000 [exp] 247 / 4e-75 AT4G24180 348 / 5e-121 THAUMATIN-LIKE PROTEIN 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0293 [flax] [poplar] CDC PF00314 [flax] [poplar] Thaumatin Thaumatin family CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Lus10036435 pacid=23174667 polypeptide=Lus10036435 locus=Lus10036435.g ID=Lus10036435.BGIv1.0 annot-version=v1.0 ATGCAGCAGAGATTGAAACAACAACAACAACATCAACATCAAGCCCTAATGCATCAAGCTATAATCCAACAACAACAAATGTACCATCCAGGTGTACTAG CAGCTGCCATGTCTCAGATGGAACCAATTCCTAGTGGCAATCTACCTCCTGGATTTGACTCATCCACTTGTCGCAGTGTTTATGTAGGAAACATTCATGT GAATGTGACAGAGAAACTACTTGCTGAAGTGTTCCAAACTGCTGGGCCTTTAACAGGGTGTAAGCTTATCAGAAAGGAAAAGGCATGGCATTTTCACATA TTTGTCGGAGACCTGAGCCCAGAGGTTACTGACGCAACTTTGTTTGTATGCTTCTCAGTCTATCCTAGTTGCTCGGATGCAAGAGTGATGTGGGATCACA AGACTGGTCGGTCCAAAGGATATGGCTTTGTCTCCTTCAGAAGCCAGCTGGAGGCCCAAAGTGCCATCAATGATTTAACTGGGAAATGGCTTGGAAATAG GCAAATAAGATGCAACTGGGCCACTAAAGGTGTGCTATCGAGTGAAGACAAACAAAGCAGTGACAGCCAAAACGCTGTCGTTCTTACAAATGGAACTCCA GAAGAAGAAGGTGAAGAAAGCAACAATATTAGTAATGAAGAGGCACCTGAAAACAACCCAGCTTACACTACTGTGTACGTTGGCAATTTGTCGTACGAGG TGACTCAAGCAGAGCTGCATTGCCATTTCCATGCACTTGGAGTTGGTTGCATCGAAGAGGTTCGGATTCAGAGAGATAAAGGGTTTGGATTTGTGAGGTA TAACACCCATGAAGAAGCTACTTCTGCTATTCGAATGGGTAATGGAAAGATCGTCCATGGCAAACCCATGAAGTGCTCATGGGGAAGCAAGCCAACACCA GCAGGAACAATATCAAACCCTCTACCACCTCCACCGCAGCAAACATACCAAATCATCACATCAGCAGCAGCAGCAGCAAACATGAACCACAATCATCACC ATCATCATCAAGCAGCTGGATACACTGCAGCTGATCTGTTAATATACCAGAGACAACTTGCTTTGAGCCAAGCTGCTGGCCTTTCGGGACAAGCTCTTGT TCAGTTCACCGGACAACATGGCTTAGGCTCTGCTGTCTCCCAAGCACTCTACGATGGCTACCCCAATGGTTCTGCAGCTCAGCAACTTATCCAACATTTG AACTTCGGTTTGAACTTCGATACAGCCAACAATAATGTCGGGTTTCAGAATAATAATGGGTGTTTGTTCATCGTTGCTCGCTCATCAAGTCCCAACCTTT TTCCTAAAGTTGAAGTGAAAAGCAATACTCTTTGCCACTTTCGATTATCATCACCACCGCCCACCGCCATTAATTTCTTCCGATTCCTCCCATCTCTCAA CAATGGATCCTCATCTCCTTCTCTTCCTCCTCCTCCTTTGCACATCTTCACTCTCTGGTTCAAATCCCATCCCCAGACTGAATTGCAACAAGCACCACCT ACCAAAACCACCACCCGCTGCCGCCAAACAATCTGGCCTGGACTCCTCTCCGGCGCCAACACACCTCAGCTCCCCACCACCGGATTCGCCCTCCGTCCAG GAAAGTCCAGGTCAATCTCCATCCCCACCGCCTGGTCCGGCCGCATATGGGGCCGGACCCTCTGTTCCTCCTCCGCCGCCGACGGCAGCGGCGATAAATT CTCCTGTCTAACCGCCGATTGCGGCTCTGGAAAAGTGGAGTGCGCCGGGAGCGGAGCCAAGCCGCCGGCGACGCTGGTGGAGTTCACTCTCAACGGCGCC GACGGGCTGGACTTCTACGACGTGAGCTTGGTCGACGGGTACAACCTCCCGATGCTCGTTTACCCCAAAAAAGTGACCCGAGGCGGCTGCGGCGCCACCG GGTGTTTGATCGACCTGAACGGCTCGTGCCCTAGGGATTTAAAGGTGATGGCGCGTGTGAAAGGGAAGGTCGGCGGGGTCGGGTGTAGGAGTGCTTGCGA GGCGTTTGGGGATCCGAGGTTCTGCTGCGCTGGGGCTTATGCCACGCCAGAGACTTGTGGACCGTCGGATTACTCTCTGTTTTTCAAGTATGCTTGTCCA CGGTCGTATAGCTACGCTTATGATGATAAGACGAGTACGTATACTTGTGCTGATACGGATTATGTCATCGTTTTCTGCCCACACCCTTATGCCAGCCCTA GTGACAGGGAATTGGTTTGGCAAGTGGAAGTAATTTTGAGCATTTTTCCTACCGGTGAAATGAAGAAATTCTGGGGAGAAGGAAAGACGGGGCAGCATTG CCACTGGTTAACAAGACAACAATGTACTGGCCTAGCAGACATCCCAATCCCGCTTTCTCTTCAGTCAGATAGCACGAAGAAGAAGAAGAAGCTCTCAGCT GATAAAGGACATACCATGCTTACTGGCTTTCGAGATAGATGA
AA sequence Show only first row Show all	>Lus10036435 pacid=23174667 polypeptide=Lus10036435 locus=Lus10036435.g ID=Lus10036435.BGIv1.0 annot-version=v1.0 MQQRLKQQQQHQHQALMHQAIIQQQQMYHPGVLAAAMSQMEPIPSGNLPPGFDSSTCRSVYVGNIHVNVTEKLLAEVFQTAGPLTGCKLIRKEKAWHFHI FVGDLSPEVTDATLFVCFSVYPSCSDARVMWDHKTGRSKGYGFVSFRSQLEAQSAINDLTGKWLGNRQIRCNWATKGVLSSEDKQSSDSQNAVVLTNGTP EEEGEESNNISNEEAPENNPAYTTVYVGNLSYEVTQAELHCHFHALGVGCIEEVRIQRDKGFGFVRYNTHEEATSAIRMGNGKIVHGKPMKCSWGSKPTP AGTISNPLPPPPQQTYQIITSAAAAANMNHNHHHHHQAAGYTAADLLIYQRQLALSQAAGLSGQALVQFTGQHGLGSAVSQALYDGYPNGSAAQQLIQHL NFGLNFDTANNNVGFQNNNGCLFIVARSSSPNLFPKVEVKSNTLCHFRLSSPPPTAINFFRFLPSLNNGSSSPSLPPPPLHIFTLWFKSHPQTELQQAPP TKTTTRCRQTIWPGLLSGANTPQLPTTGFALRPGKSRSISIPTAWSGRIWGRTLCSSSAADGSGDKFSCLTADCGSGKVECAGSGAKPPATLVEFTLNGA DGLDFYDVSLVDGYNLPMLVYPKKVTRGGCGATGCLIDLNGSCPRDLKVMARVKGKVGGVGCRSACEAFGDPRFCCAGAYATPETCGPSDYSLFFKYACP RSYSYAYDDKTSTYTCADTDYVIVFCPHPYASPSDRELVWQVEVILSIFPTGEMKKFWGEGKTGQHCHWLTRQQCTGLADIPIPLSLQSDSTKKKKKLSA DKGHTMLTGFRDR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G38670			Pathogenesis-related thaumatin...		Lus10036435 [exp]	0	1
AT3G53810			Concanavalin A-like lectin pro...		Lus10001564 [exp]	4.0	0.8880
AT5G51780	bHLH	bHLH036	basic helix-loop-helix (bHLH) ...		Lus10027395 [exp]	10.4	0.8948
AT1G14040			EXS (ERD1/XPR1/SYG1) family pr...		Lus10036782 [exp]	13.6	0.8896
AT1G22400		ATUGT85A1, UGT8...	ARABIDOPSIS THALIANA UDP-GLUCO...		Lus10013924 [exp]	15.0	0.9013
AT1G61110	NAC	ANAC025	NAC domain containing protein ...		Lus10018469 [exp]	24.0	0.7960
AT5G10750			Protein of unknown function (D...		Lus10026907 [exp]	24.5	0.8455
AT1G70580		GGT2, AOAT2	GLUTAMATE:GLYOXYLATE AMINOTRAN...		Lus10006203 [exp]	25.5	0.8933
AT5G45550		MOB1-like	MOB1-like, Mob1/phocein family...		Lus10021556 [exp]	28.0	0.8661
AT1G14700		PAP3, ATPAP3	purple acid phosphatase 3 (.1....		Lus10034429 [exp]	28.5	0.8736
AT2G15580			RING/U-box superfamily protein...		Lus10030120 [exp]	30.8	0.8930

Compare expression of checked genes

Lus10036435 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.