Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041110 [exp] 924 / 0 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G167800 [exp] 712 / 0 ND / Potri.007G089400 [exp] 575 / 0 ND / Potri.005G078500 [exp] 553 / 0 ND / Potri.007G010000 [exp] 454 / 2e-155 ND / Potri.002G093000 [exp] 305 / 2e-101 ND /
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF00150 [flax] [poplar] Cellulase Cellulase (glycosyl hydrolase family 5) CL0066 [flax] [poplar] Trefoil PF06268 [flax] [poplar] Fascin Fascin domain
Representative CDS sequence Show only first row Show all	>Lus10036436 pacid=23174372 polypeptide=Lus10036436 locus=Lus10036436.g ID=Lus10036436.BGIv1.0 annot-version=v1.0 ATGAAATCCATCTCCCAGATACGCTTCTTCATATCACTCTGTTTCCTGTTTGGTGTATCCAATGGCAGATTGATGACAGATTCGAAGATTCGAGCAGTTA ACCTTGGAGGATGGCTGGTTACAGAAGGCTGGATTAAGCCATCTCTGTTTGATGGAATACCCAACAAAGATTTCCTGGACGGAACAGAGCTTCAGTTGAA ATCAGTTACAGTGGGGAAGTACCTCTGTGCCGAGAATGGCGGAGGAAGCATCGTCGTCGCTAACAGGGCATCCGCCTCCGGATGGGAGTCGTTCAGGCTA TGGAGAAAGAACGAGAAAACCTTCGGCTTCAGGGTGTTCAACGGACAGTTCATCAGTGCTGGTGCGAATGGAATCCTCGAGGCGATGGCTTCAACGGACA AAGACAAATTCGAGATTGTTCGGAGCAGCAGTGATCCCAACCGGATTCGAATCAAAGCTGCAAACGGTTTGTTTATGCAGGTGAAGACAGAGGAATTAGT GACGGCTGATAACAAAGGAGAAGGGGACTGGGGAGATCAAGATCCATCTGTATTTCTCATGAGGATTTCAAGAAGGTTGCAGGGTGAGTTTCAGGTTACT AATGGCTATGGTCCGAGGGTAGCACCACGGGTTATGAGGGAACATTGGAACACATTCATAGTTGAGGAAGACTTCAAGTTCATTTCCAAGAACCGGTTAA ACTCGGTCAGAATACCGGTTGGGTGGTGGATAGCCAGTGACCCAAGGCCGCCTAAACCGTTTGTAGGCGGATCCTTAAACGCTCTGGATAAGGCCTTCTG TTGGGCAGAAAAATACGGACTGAAGGTCATACTCGACTTGCACGCAGCACCCGGTTCGCAAAATGGGTTCGAGCACAGCAGCTCCAGAGACGGTTCGCAG GAGTGGGGGCTCACCGACAAAAACATCCAACAAACCGTTCGTGTGATAGACTTCTTGAGCGCTCGGTATGCAAAGAGCCGAAGTTTGTACGCGGTTGAGC TTATCAACGAGCCAATGTCCCCCGGAGTGTCGTTGGCTAACGTGGAGAAGTATTACCAGGCCGGTTACAACGCCGTTCGGAGGCACTCATTGACTGCCTA CGTGGTGTTGTCGAACGGGCTGGGAGATAGTCAACCAAGAGAGCTTTTCACACTTGCAAGTGAGTTGAAAGGTGCCGTGATTGATGTCCACTACTACAAT CTCTTCTCCTCCGTTTTTGACGACTTAACCGTCCAACAGAACGTTGACTTTGTCAACGTCAACCGGTCTGCTGAGCTGAATCATTTGACTATTTCCAACG GACCACTCATCTTCATCGGGGAGTGGGTTGCAGAGTGGCAAGTTCAAAGTGGAAGCAAAGAAGATTACAAAAGATTTGGGGAAGCACAACTGGAGGTTTA TGGGCGTGCTACTTTTGGTTGGTCTTATTGGACTCTCAAGAATTTCAATAATCACAATTCCGGCGACGGGCAGTCATGGTTAATGGGATATCCGACCCAT CACCGATCCGATAACAAAACGACGTCGTTTTGTCCATGA
AA sequence Show only first row Show all	>Lus10036436 pacid=23174372 polypeptide=Lus10036436 locus=Lus10036436.g ID=Lus10036436.BGIv1.0 annot-version=v1.0 MKSISQIRFFISLCFLFGVSNGRLMTDSKIRAVNLGGWLVTEGWIKPSLFDGIPNKDFLDGTELQLKSVTVGKYLCAENGGGSIVVANRASASGWESFRL WRKNEKTFGFRVFNGQFISAGANGILEAMASTDKDKFEIVRSSSDPNRIRIKAANGLFMQVKTEELVTADNKGEGDWGDQDPSVFLMRISRRLQGEFQVT NGYGPRVAPRVMREHWNTFIVEEDFKFISKNRLNSVRIPVGWWIASDPRPPKPFVGGSLNALDKAFCWAEKYGLKVILDLHAAPGSQNGFEHSSSRDGSQ EWGLTDKNIQQTVRVIDFLSARYAKSRSLYAVELINEPMSPGVSLANVEKYYQAGYNAVRRHSLTAYVVLSNGLGDSQPRELFTLASELKGAVIDVHYYN LFSSVFDDLTVQQNVDFVNVNRSAELNHLTISNGPLIFIGEWVAEWQVQSGSKEDYKRFGEAQLEVYGRATFGWSYWTLKNFNNHNSGDGQSWLMGYPTH HRSDNKTTSFCP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10036436 [exp]	0	1
AT3G53810			Concanavalin A-like lectin pro...		Lus10004980 [exp]	1.0	0.9467
AT4G19380			Long-chain fatty alcohol dehyd...		Lus10035673 [exp]	1.7	0.9401
					Lus10027917 [exp]	2.4	0.9350
AT1G70580		GGT2, AOAT2	GLUTAMATE:GLYOXYLATE AMINOTRAN...		Lus10006203 [exp]	6.2	0.9414
					Lus10029450 [exp]	6.9	0.9060
AT1G09570		FHY2, HY8, FRE1...	ELONGATED HYPOCOTYL 8, FAR RED...		Lus10007594 [exp]	7.0	0.9347
AT1G67560		ATLOX6, LOX6	Arabidopsis thaliana lipoxygen...		Lus10006429 [exp]	7.5	0.9386
AT4G09960	MADS	AGL11, STK	SEEDSTICK, AGAMOUS-like 11, K-...		Lus10009481 [exp]	8.4	0.9166
					Lus10020564 [exp]	11.0	0.9362
AT4G21910			MATE efflux family protein (.1...		Lus10039673 [exp]	11.8	0.9096

Compare expression of checked genes

Lus10036436 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.