Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041112 [exp] 244 / 7e-84 ND / Lus10018519 [exp] 42 / 7e-05 ND / Lus10039737 [exp] 42 / 8e-05 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G204000 [exp] 48 / 8e-07 ND / Potri.002G058200 [exp] 45 / 8e-06 ND / Potri.014G141600 [exp] 44 / 1e-05 ND /
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05678 [flax] [poplar] VQ VQ motif
Representative CDS sequence Show only first row Show all	>Lus10036438 pacid=23174460 polypeptide=Lus10036438 locus=Lus10036438.g ID=Lus10036438.BGIv1.0 annot-version=v1.0 ATGGACGCCAAACTAAGACAGTCGGCGTCGTCAACCAAGGTATGCAAGAAGGAGAGGCGAAACGGTGGCAAGTCGTCCTCCTCGTCGTTGAGTTCGACGA CCACGAGCAGTTTAATGAGCATCCTCCGCCCCAAAGTTTACATCACCGACACTTCAAGCTTCAAGAGCCTCGTTCAGGAGCTCACCGGACGATCAAACTA TCCCCTGCCGCGGGCATCCGCCGCCACCACGTCAACATCCTCGTCTATTCCGAATCTCAGTGAATCCCAGGATTACACCGACCATGTAGAAGGGCCGTCG TCCGACGTCACTACTGGCACCGGGGCTCATTTCTTCTCTTGTTATGAAGATGATGCTGTCGCCGGAGAGGTGGTTATCGGAGGCGCCGGTGAAGGGAGTT ACGGTGACATCATGCATGACGGGATGGATCTTTTGACCTACAGGCTGCTGGAGTCTTGGCTTTTGGATACTAATCATCGTGGTAACGATCATGTTGTGAC GAATTAG
AA sequence Show only first row Show all	>Lus10036438 pacid=23174460 polypeptide=Lus10036438 locus=Lus10036438.g ID=Lus10036438.BGIv1.0 annot-version=v1.0 MDAKLRQSASSTKVCKKERRNGGKSSSSSLSSTTTSSLMSILRPKVYITDTSSFKSLVQELTGRSNYPLPRASAATTSTSSSIPNLSESQDYTDHVEGPS SDVTTGTGAHFFSCYEDDAVAGEVVIGGAGEGSYGDIMHDGMDLLTYRLLESWLLDTNHRGNDHVVTN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10036438 [exp]	0	1
AT1G22150		SULTR1;3	sulfate transporter 1;3 (.1)		Lus10036437 [exp]	3.2	0.9196
AT1G22150		SULTR1;3	sulfate transporter 1;3 (.1)		Lus10041111 [exp]	9.5	0.8872
AT4G01070		UGT72B1, GT72B1	UDP-GLUCOSE-DEPENDENT GLUCOSYL...		Lus10005951 [exp]	13.1	0.9110
AT5G39220			alpha/beta-Hydrolases superfam...		Lus10032977 [exp]	13.7	0.8915
AT3G22600			Bifunctional inhibitor/lipid-t...		Lus10039348 [exp]	14.3	0.9101
AT5G06740			Concanavalin A-like lectin pro...		Lus10016257 [exp]	17.9	0.9025
AT3G22600			Bifunctional inhibitor/lipid-t...		Lus10010572 [exp]	18.3	0.8742
AT5G17000			Zinc-binding dehydrogenase fam...		Lus10004379 [exp]	19.9	0.9066
AT5G61820			unknown protein		Lus10003210 [exp]	20.1	0.8858
AT4G37370		CYP81D8	"cytochrome P450, family 81, s...		Lus10020437 [exp]	20.2	0.8965

Compare expression of checked genes

Lus10036438 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.