Plant FIBer expression Database

Lus10036440 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G60460 246 / 3e-77 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10041115
[exp]
639 / 0 AT1G60460 261 / 5e-83 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.010G041900
[exp]
308 / 3e-101 AT1G60460 362 / 6e-121 unknown protein
PFAM info
Representative CDS sequence
>Lus10036440 pacid=23174488 polypeptide=Lus10036440 locus=Lus10036440.g ID=Lus10036440.BGIv1.0 annot-version=v1.0
ATGGAAGCATCTTCGTCTCTGAAGCTCTGTTCTGAAATATACAATTGTCAAGTGAATTTGCTGGAACACAGGTCTGACAGAAAGCTCACACACCTTCCAT
CAAACTTAAAGAATGGAGTCAAGTTCAGGCACGGACTTGGTACTGAAGTCTGTCTATCGATTTTCGAGAGCATGGACGTTCTAGTTTCTGAGCTGAATTC
CTTTCTCCAGAAGATGCTCGTTCTGGAGATCCCTAATATCGCATCAGAGGTTGTGGTTGAACAAGAAGGTGTTCCTGGATCGCGATCTGAGTATGTCTAT
CCAGCTGTTGAGGAAATTTTTCTTAGTTCTAGCTCAAGTATTAAACATCTGCAGTCAGGTCTTGAGGAATATGTCTTGAAGCATGGAAAAAATTCACTTC
AAAAGGAATATCTCAAGGTTGGAGCTGCCTCCTGTAGCTCTGAAAGTCGGAAAAATTCCGGAGTAGTAATGGAAGCTGTAGTTGTTGTAAGCGAGGCAGA
GACAGCTCATCCCTCTAGTACAGGCAGCTCAGAGACACAGGTGCTGTATTACAAGAATTTTAAACCTTCATCAATGGCTAGATCAACACTAACTGCCTTG
TCGAGCATTGATTGGAAAAGCTACGGATTGACTCTGCGGAATGCTACCGATCAAGATGGCTGCTTACTTCACTGGGATAACTTACAGTCTAACGTGCATA
TCTATATGCATACAGAACTGTCACCAAGGCGTAAAACCGAACCTGACAAAAACGTCGTAAAAAAGGCCGTTAAGCTTGCAATGGATGATTTGAAGGACAG
GAATCCAGGACTACTTCTTAGCCAGCGTAGCATCAGGATACGCAGTTATGCCCCCGATCTCGCGAGATCGATTGCTGGCCTCATTACATCATCTATCGAC
AAAGATTTTCGAGAGGAATGCTTCTCTCTTCTAGGCTTGCAGTGTGAAGAGATAGGAACAGCTGAAGATTGTATCAGGAAAAAGCTCATTTCAGTTATAG
AAGTGAACGACCGGAATTCCTCAAAAAGCTGCAAGGATGTGGCGGCTGCTACTTGCCTGTTTGGAGATGACTCGTACCGTGCAGGAGGAAGAGGTAATGT
TGCTTTCATGCTTGAAGATGATTCGTTTCCTAGTTCTTACCTTCAGGAAGATGAATATGAAGTAGAAGAGGATTATGGCGAAATGGATTTGGCGAGTTGA
AA sequence
>Lus10036440 pacid=23174488 polypeptide=Lus10036440 locus=Lus10036440.g ID=Lus10036440.BGIv1.0 annot-version=v1.0
MEASSSLKLCSEIYNCQVNLLEHRSDRKLTHLPSNLKNGVKFRHGLGTEVCLSIFESMDVLVSELNSFLQKMLVLEIPNIASEVVVEQEGVPGSRSEYVY
PAVEEIFLSSSSSIKHLQSGLEEYVLKHGKNSLQKEYLKVGAASCSSESRKNSGVVMEAVVVVSEAETAHPSSTGSSETQVLYYKNFKPSSMARSTLTAL
SSIDWKSYGLTLRNATDQDGCLLHWDNLQSNVHIYMHTELSPRRKTEPDKNVVKKAVKLAMDDLKDRNPGLLLSQRSIRIRSYAPDLARSIAGLITSSID
KDFREECFSLLGLQCEEIGTAEDCIRKKLISVIEVNDRNSSKSCKDVAAATCLFGDDSYRAGGRGNVAFMLEDDSFPSSYLQEDEYEVEEDYGEMDLAS

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G60460 unknown protein Lus10036440
[exp]
0 1
AT5G35410 ATSOS2, CIPK24,... SNF1-RELATED PROTEIN KINASE 3.... Lus10043264
[exp]
3.5 0.7045
AT4G24550 Clathrin adaptor complexes med... Lus10024548
[exp]
5.1 0.7446
AT1G24120 ARL1 ARG1-like 1 (.1) Lus10010717
[exp]
12.2 0.7271
AT1G18640 PSP 3-phosphoserine phosphatase (.... Lus10021156
[exp]
14.7 0.6846
AT1G59750 ARF ARF1 auxin response factor 1 (.1.2.... Lus10024455
[exp]
15.3 0.7313
AT2G39760 ATBPM3 BTB/POZ/MATH-domains containin... Lus10040267
[exp]
20.2 0.6711
AT1G10710 PHS1 poor homologous synapsis 1 (.1... Lus10026691
[exp]
23.0 0.6138
AT3G19980 STPP, ATFYPP3, ... SERINE/THREONINE PROTEIN PHOSP... Lus10013456
[exp]
23.2 0.7188
AT3G10390 FLD FLOWERING LOCUS D, Flavin cont... Lus10028817
[exp]
32.4 0.6465
AT1G24120 ARL1 ARG1-like 1 (.1) Lus10029202
[exp]
34.9 0.7092

Lus10036440 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.