Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G11730 350 / 2e-124 ATFP8, AtRABD1 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG D1, Ras-related small GTP-binding family protein (.1) AT4G17530 327 / 2e-115 RAB1C, AtRab1C, AtRABD2c RAB GTPase homolog 1C (.1) AT1G02130 323 / 7e-114 ARA5, AtRABD2a, AtRab1B, Ara-5 ARABIDOPSIS THALIANA RAB D2A, ARABIDOPSIS THALIANA RESPONSIVE TO ABSCISIC ACID 1B, ARABIDOPSIS RAS 5, RAS 5 (.1) AT5G47200 323 / 1e-113 AtRABD2b, AtRab1A ARABIDOPSIS RAB GTPASE HOMOLOG D2B, RAB GTPase homolog 1A (.1) AT5G59840 240 / 6e-81 Ras-related small GTP-binding family protein (.1) AT3G46060 240 / 7e-81 ARA3, Ara-3, AtRABE1c, AtRab8A RAB GTPase homolog 8A (.1.2.3) AT3G53610 237 / 1e-79 ATRAB8, AtRab8B, AtRABE1a RAB GTPase homolog 8 (.1.2.3) AT3G09900 229 / 2e-76 AtRABE1e, AtRab8E RAB GTPase homolog E1E (.1) AT5G03520 226 / 3e-75 ATRAB-E1D, AtRab8C, AtRABE1d ARABIDOPSIS RAB HOMOLOG E1D, RAB GTPase homolog 8C (.1.2) AT4G35860 188 / 2e-60 ATGB2, AtRABB1b, Atrab2C GTP-binding 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041117 [exp] 355 / 3e-125 AT3G11730 302 / 3e-104 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG D1, Ras-related small GTP-binding family protein (.1) Lus10010999 [exp] 322 / 5e-113 AT5G47200 387 / 3e-139 ARABIDOPSIS RAB GTPASE HOMOLOG D2B, RAB GTPase homolog 1A (.1) Lus10000595 [exp] 320 / 2e-112 AT5G47200 387 / 3e-139 ARABIDOPSIS RAB GTPASE HOMOLOG D2B, RAB GTPase homolog 1A (.1) Lus10005890 [exp] 236 / 3e-79 AT3G46060 396 / 2e-142 RAB GTPase homolog 8A (.1.2.3) Lus10005443 [exp] 233 / 6e-78 AT3G46060 394 / 2e-141 RAB GTPase homolog 8A (.1.2.3) Lus10037608 [exp] 227 / 2e-76 AT1G02130 255 / 1e-87 ARABIDOPSIS THALIANA RAB D2A, ARABIDOPSIS THALIANA RESPONSIVE TO ABSCISIC ACID 1B, ARABIDOPSIS RAS 5, RAS 5 (.1) Lus10007698 [exp] 221 / 3e-73 AT3G46060 378 / 1e-135 RAB GTPase homolog 8A (.1.2.3) Lus10024423 [exp] 218 / 4e-72 AT3G46060 376 / 7e-135 RAB GTPase homolog 8A (.1.2.3) Lus10025309 [exp] 218 / 5e-72 AT3G46060 374 / 1e-133 RAB GTPase homolog 8A (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G226600 [exp] 392 / 7e-141 AT3G11730 364 / 4e-130 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG D1, Ras-related small GTP-binding family protein (.1) Potri.003G004000 [exp] 384 / 5e-138 AT3G11730 359 / 2e-128 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG D1, Ras-related small GTP-binding family protein (.1) Potri.001G080400 [exp] 328 / 6e-116 AT1G02130 387 / 2e-139 ARABIDOPSIS THALIANA RAB D2A, ARABIDOPSIS THALIANA RESPONSIVE TO ABSCISIC ACID 1B, ARABIDOPSIS RAS 5, RAS 5 (.1) Potri.003G081800 [exp] 327 / 3e-115 AT1G02130 391 / 9e-141 ARABIDOPSIS THALIANA RAB D2A, ARABIDOPSIS THALIANA RESPONSIVE TO ABSCISIC ACID 1B, ARABIDOPSIS RAS 5, RAS 5 (.1) Potri.002G138400 [exp] 326 / 7e-115 AT1G02130 393 / 1e-141 ARABIDOPSIS THALIANA RAB D2A, ARABIDOPSIS THALIANA RESPONSIVE TO ABSCISIC ACID 1B, ARABIDOPSIS RAS 5, RAS 5 (.1) Potri.014G049400 [exp] 323 / 9e-114 AT1G02130 390 / 2e-140 ARABIDOPSIS THALIANA RAB D2A, ARABIDOPSIS THALIANA RESPONSIVE TO ABSCISIC ACID 1B, ARABIDOPSIS RAS 5, RAS 5 (.1) Potri.001G152800 [exp] 322 / 4e-113 AT1G02130 382 / 2e-137 ARABIDOPSIS THALIANA RAB D2A, ARABIDOPSIS THALIANA RESPONSIVE TO ABSCISIC ACID 1B, ARABIDOPSIS RAS 5, RAS 5 (.1) Potri.009G027900 [exp] 244 / 1e-82 AT3G46060 341 / 8e-121 RAB GTPase homolog 8A (.1.2.3) Potri.001G236100 [exp] 241 / 6e-81 AT5G59840 333 / 1e-117 Ras-related small GTP-binding family protein (.1) Potri.008G051700 [exp] 239 / 2e-80 AT3G46060 329 / 7e-116 RAB GTPase homolog 8A (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00071 [flax] [poplar] Ras Ras family
Representative CDS sequence Show only first row Show all	>Lus10036442 pacid=23174614 polypeptide=Lus10036442 locus=Lus10036442.g ID=Lus10036442.BGIv1.0 annot-version=v1.0 ATGAGGCGGCAGAAAGGAAAAAAAAAGACTGAAGGACTGAAGGAGGAGGATGGAGGAGTCGATCGCGACTACCTCTTCAAGCTTCTGCTAATCGGCGACT CCTCTGTTGGGAAATCTTGCCTGCTGCTCCGATTTGCTGATGATTCGTACGTCGACAGCTACATCAGTACTATAGGAGTTGATTTCAAAATCAGAACTGT GGAGCTCGATGGGAAGACGGTCAAGCTTCAGATCTGGGATACTGCTGGTCAGGAGCGCTTTCGAACAATAACAAGCAGTTATTACCGAGGGGCACATGGA ATCATCATTGTCTACGATGTTACTGACATGGAGAGCTTCAACAATGTCAAGCAATGGTTAAATGAGATTGACCGATATGCAAATGATACTGTATGCAAGC TTTTGGTTGGGAACAAATGCGATCTTGTTGAGAACAAAGTTGTCGATACGCAGACAGCAAAGGCGTTGGCCGATGAGCTAGGCATCCCTTTTCTGGAGAC CAGTGCCAAAGATTCAATAAATGTGGAACAAGCTTTCTTAACAATGGCTGCAGAAATTAAGAAAAAAATGGGTAACCAACCGACAGCTAGCAAGGCGACC GGAACGGTTCAGATGAAAGGACAACCGATCCAGCAAAACAACAACTGCTGTGGTTAA
AA sequence Show only first row Show all	>Lus10036442 pacid=23174614 polypeptide=Lus10036442 locus=Lus10036442.g ID=Lus10036442.BGIv1.0 annot-version=v1.0 MRRQKGKKKTEGLKEEDGGVDRDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTVKLQIWDTAGQERFRTITSSYYRGAHG IIIVYDVTDMESFNNVKQWLNEIDRYANDTVCKLLVGNKCDLVENKVVDTQTAKALADELGIPFLETSAKDSINVEQAFLTMAAEIKKKMGNQPTASKAT GTVQMKGQPIQQNNNCCG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G11730		ATFP8, AtRABD1	ARABIDOPSIS THALIANA RAB GTPAS...		Lus10036442 [exp]	0	1
AT5G34940		ATGUS3	glucuronidase 3 (.1.2.3)		Lus10001923 [exp]	1.0	0.9124
AT1G04760		ATVAMP726	vesicle-associated membrane pr...		Lus10025933 [exp]	2.8	0.9108
AT1G09010			glycoside hydrolase family 2 p...		Lus10000159 [exp]	3.2	0.8778
AT3G54170		ATFIP37	FKBP12 interacting protein 37 ...		Lus10027681 [exp]	3.9	0.9083
AT5G51170			unknown protein		Lus10035151 [exp]	4.9	0.8713
AT3G15150		HPY2, ATMMS21	HIGH PLOIDY2, A. THALIANA METH...		Lus10015968 [exp]	5.3	0.9032
AT4G15950		RDM2, NRPE4, NR...	RNA-DIRECTED DNA METHYLATION 2...		Lus10038766 [exp]	5.5	0.8959
AT3G52270			Transcription initiation facto...		Lus10030963 [exp]	5.8	0.8514
AT2G34160			Alba DNA/RNA-binding protein (...		Lus10043279 [exp]	6.5	0.8935
AT4G17085			Putative membrane lipoprotein ...		Lus10029696 [exp]	7.9	0.8324

Compare expression of checked genes

Lus10036442 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.