Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G16350 52 / 3e-08 Aldolase-type TIM barrel family protein (.1) AT1G79470 48 / 1e-06 Aldolase-type TIM barrel family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001763 [exp] 168 / 2e-48 AT1G54310 653 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10000276 [exp] 114 / 2e-30 AT1G16350 469 / 5e-164 Aldolase-type TIM barrel family protein (.1) Lus10011631 [exp] 95 / 2e-25 ND 48 / 8e-08
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G173600 [exp] 90 / 5e-21 AT1G16350 661 / 0.0 Aldolase-type TIM barrel family protein (.1) Potri.008G082800 [exp] 74 / 2e-15 AT1G16350 717 / 0.0 Aldolase-type TIM barrel family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10036443 pacid=23174550 polypeptide=Lus10036443 locus=Lus10036443.g ID=Lus10036443.BGIv1.0 annot-version=v1.0 ATGAGGCGGCTGCAAGCCGCTCTTCAACCAAGGCTACCCCTACACCTACGACGACAGCATCTTCCTTCCTCACTACATCGACTTCTTCACAGACGACGTC TCTCTCTCAACCTCCCTCTCCCGCAACATCCGCCTCTCCATCCCTTGCGTCTCCTCTCTGATGGACACCGTCACCGAGTCCGCCATGGCCGCCTCCATGG TCGCACTCGTCGGTATTGGAATCGTCCACTACAACACCACTTCTTCTACCAGGCCTCCTTCGTCAGATCCGTCAAATCCCGTCGCGTACCTCTGCTTTCC AGTCCGATCGTCTTCTCCCCAGACTCTCGGTCTGAGAAGAAGGATTTGAAATTGGTGGATTACATGATCCCCACTGATTTGTCCCTCCTAGTTCCATCTA GCTACGGTCTGGATAAGCTCGATTCCCACCTACAACATCAGCAAGGGCGGGACTTTGATGTTCTGGCTGAGGAAGAAGGAGGAATCCTCGATGTGGTTAC TAAGGAGGCAGTGGAGAAGGTGAAGGGATCCTCTAAGTTTGGAAAGGAAACTGTTGGTAGCGACGGATCTTAG
AA sequence Show only first row Show all	>Lus10036443 pacid=23174550 polypeptide=Lus10036443 locus=Lus10036443.g ID=Lus10036443.BGIv1.0 annot-version=v1.0 MRRLQAALQPRLPLHLRRQHLPSSLHRLLHRRRLSLNLPLPQHPPLHPLRLLSDGHRHRVRHGRLHGRTRRYWNRPLQHHFFYQASFVRSVKSRRVPLLS SPIVFSPDSRSEKKDLKLVDYMIPTDLSLLVPSSYGLDKLDSHLQHQQGRDFDVLAEEEGGILDVVTKEAVEKVKGSSKFGKETVGSDGS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G16350			Aldolase-type TIM barrel famil...		Lus10036443 [exp]	0	1
AT1G60010			unknown protein		Lus10030835 [exp]	3.2	0.9683
AT2G43400		ETFQO	electron-transfer flavoprotein...		Lus10027045 [exp]	3.7	0.9687
AT5G41761			unknown protein		Lus10012634 [exp]	4.5	0.9603
AT3G14260			Protein of unknown function (D...		Lus10001484 [exp]	6.0	0.9662
AT2G14680		MEE13	maternal effect embryo arrest ...		Lus10010456 [exp]	6.0	0.9447
AT4G37870		PCK1, PEPCK	phosphoenolpyruvate carboxykin...		Lus10028227 [exp]	6.3	0.9674
AT3G01430			unknown protein		Lus10014527 [exp]	7.1	0.9672
AT5G37600		ATGLN1;1, GLN1;...	ARABIDOPSIS THALIANA GLUTAMINE...		Lus10012536 [exp]	7.7	0.9562
AT1G10070		ATBCAT-2	branched-chain amino acid tran...		Lus10028247 [exp]	10.8	0.9679
AT4G32480			Protein of unknown function (D...		Lus10015437 [exp]	11.5	0.9625

Compare expression of checked genes

Lus10036443 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.