Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G26850 391 / 1e-134 F-box family protein (.1) AT2G32560 376 / 7e-129 F-box family protein (.1) AT2G41170 313 / 4e-104 F-box family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036061 [exp] 414 / 2e-143 AT2G32560 445 / 3e-156 F-box family protein (.1) Lus10041118 [exp] 144 / 6e-42 AT5G54570 43 / 1e-05 beta glucosidase 41 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G068100 [exp] 427 / 2e-148 AT2G32560 444 / 1e-155 F-box family protein (.1) Potri.001G273900 [exp] 423 / 6e-147 AT2G26850 440 / 3e-154 F-box family protein (.1) Potri.006G040000 [exp] 380 / 3e-130 AT2G26850 374 / 1e-128 F-box family protein (.1) Potri.016G035900 [exp] 370 / 2e-126 AT2G26850 389 / 2e-134 F-box family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0271 [flax] [poplar] F-box PF00646 [flax] [poplar] F-box F-box domain
Representative CDS sequence Show only first row Show all	>Lus10036444 pacid=23174443 polypeptide=Lus10036444 locus=Lus10036444.g ID=Lus10036444.BGIv1.0 annot-version=v1.0 ATGATGATCTTCTACTTCTTCATCACCCTTTTCTCCTTCATCCTCTTTCTAAAACCCCATCCAAAATCTTTCGATTTCAGAGCGTTTTCCATTCTTAAAC GGAGTGTTTCCAAAACCTCCCTCGACCCGAAAAACCTGCTCAGGAACGTCTTCTTTTGTGAAAACCATGATCCTGACTCTGCTACCGGTACTACTGCTTC GGTAAATCAAGAATGTGGAAATGACGAGACGATGATGTCGATGCTGGACTTGCCTGACCTTGCCCTGGACAGCATCCTGGAGAGGCTATCACCGGCCGAG CTTTGCAGTATGGCTGGCGTTTGCACATCTCTGAGAGAGAGGTGCACGAGTGATGACCTTTGGGAAAAGCACATGAAGCAGAAATGGGGTAAGATCATTG GTCCTGCTGCTTCCAAAGAGTGGCAGCTATGGCATCATCATCAAGCTGCTAATTCTTCACAAAAAGGGTGGTTGTTGATGAGGGTTGCATCGTCTTTGTT TTGGTATCTCCATTCTTGGTTCGTCAGTTCAAATCCAGACGACTTTCATCGTAAGTGGGCCAATCCAGGTCATCCCCGAGGGTACCCCAGAGCGACAAGA ACACCCTGTGCGCATTCTTCAAGTCGTCTTGATTCGAGGACTATGGCATGGTACCTTGCTCTCGAGAGTGGGAGGTTTTGCTTCCCGGCGCAAGTCTACA ACAGGGAGAATGGACATGTGGGGTTCTTGTTGTCATGTTATGATGCCGATCTTAGTTACGATCCTCGTACCGACACCTTCCAGGCCAGATACGCACCACA TGGGAAAAGGCCAGTTACAGTAGAGACAGGGGTGCAATGGGAGAGGCTTAGAGCAACTCCAATTGATACTCCTTGCTCGTCGTCCACTCCTCACCGTCTC CATGTCTCTGATTGCTTGAACCATTTACGCCCTGGAGATCACATCGAGATTCAATGGAGACGAAACAAGGACTTCCCCTATGGCTGGTGGTATGGTGTTG TAGGTCACTTGCAAGAATGCGACGGAAACCAACAGTATTGCCGGTGCCATAACAGCGACACAGTGGTGTTGGAGTTCCATCAATATGCAGCAGGATCACG GTGGAGGCGAACAACAGTGAAAAGGACGAGTCACCGGGAAGAAGGGAACGAGGCGTCTGGATTCTATGGTGGAATTAGAATGCTTACAGAAGATAATGAA ATCTCCCGGTGGAAATTGCTTTGGCCCGCGCAACCCCTAGGGTGA
AA sequence Show only first row Show all	>Lus10036444 pacid=23174443 polypeptide=Lus10036444 locus=Lus10036444.g ID=Lus10036444.BGIv1.0 annot-version=v1.0 MMIFYFFITLFSFILFLKPHPKSFDFRAFSILKRSVSKTSLDPKNLLRNVFFCENHDPDSATGTTASVNQECGNDETMMSMLDLPDLALDSILERLSPAE LCSMAGVCTSLRERCTSDDLWEKHMKQKWGKIIGPAASKEWQLWHHHQAANSSQKGWLLMRVASSLFWYLHSWFVSSNPDDFHRKWANPGHPRGYPRATR TPCAHSSSRLDSRTMAWYLALESGRFCFPAQVYNRENGHVGFLLSCYDADLSYDPRTDTFQARYAPHGKRPVTVETGVQWERLRATPIDTPCSSSTPHRL HVSDCLNHLRPGDHIEIQWRRNKDFPYGWWYGVVGHLQECDGNQQYCRCHNSDTVVLEFHQYAAGSRWRRTTVKRTSHREEGNEASGFYGGIRMLTEDNE ISRWKLLWPAQPLG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G26850			F-box family protein (.1)		Lus10036444 [exp]	0	1
AT5G06760		AtLEA4-5, LEA4-...	Late Embryogenesis Abundant 4-...		Lus10016266 [exp]	2.4	0.7982
AT1G51990			O-methyltransferase family pro...		Lus10033647 [exp]	2.8	0.8156
AT1G70710		CEL1 ,AtGH9B1	CELLULASE 1, glycosyl hydrolas...		Lus10031139 [exp]	5.5	0.8114
					Lus10002267 [exp]	8.5	0.7336
AT5G03340			ATPase, AAA-type, CDC48 protei...		Lus10037385 [exp]	8.7	0.7043
					Lus10028027 [exp]	8.9	0.7962
AT5G14870		ATCNGC18	cyclic nucleotide-gated channe...		Lus10039415 [exp]	9.2	0.7498
					Lus10019815 [exp]	9.2	0.7947
AT1G76140			Prolyl oligopeptidase family p...		Lus10021834 [exp]	9.6	0.6653
AT5G63180			Pectin lyase-like superfamily ...		Lus10022310 [exp]	11.7	0.7430

Compare expression of checked genes

Lus10036444 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.