Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G44640 486 / 6e-168 BGLU13 beta glucosidase 13 (.1) AT5G42260 474 / 2e-163 BGLU12 beta glucosidase 12 (.1) AT2G44450 471 / 8e-162 BGLU15 beta glucosidase 15 (.1) AT3G60130 465 / 2e-159 BGLU16 beta glucosidase 16 (.1.2.3) AT2G44480 459 / 4e-157 BGLU17 beta glucosidase 17 (.1.2) AT2G25630 448 / 3e-153 BGLU14 beta glucosidase 14 (.1) AT1G51470 432 / 1e-146 TGG5, BGLU35 THIOGLUCOSIDE GLUCOHYDROLASE 5, beta glucosidase 35 (.1) AT1G47600 425 / 6e-144 BGLU34, TGG4 THIOGLUCOSIDE GLUCOHYDROLASE 4, beta glucosidase 34 (.1.2) AT3G60140 412 / 5e-138 BGLU30, SRG2, DIN2 SENESCENCE-RELATED GENE 2, DARK INDUCIBLE 2, BETA GLUCOSIDASE 30, Glycosyl hydrolase superfamily protein (.1) AT1G26560 410 / 5e-138 BGLU40 beta glucosidase 40 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026057 [exp] 601 / 0 AT2G44450 554 / 0.0 beta glucosidase 15 (.1) Lus10024065 [exp] 553 / 0 AT5G44640 511 / 2e-178 beta glucosidase 13 (.1) Lus10012687 [exp] 552 / 0 AT2G44480 525 / 0.0 beta glucosidase 17 (.1.2) Lus10008503 [exp] 517 / 1e-179 AT2G44450 489 / 2e-169 beta glucosidase 15 (.1) Lus10031235 [exp] 504 / 1e-174 AT2G44450 590 / 0.0 beta glucosidase 15 (.1) Lus10031234 [exp] 497 / 8e-172 AT2G44480 563 / 0.0 beta glucosidase 17 (.1.2) Lus10031251 [exp] 480 / 3e-165 AT2G44450 572 / 0.0 beta glucosidase 15 (.1) Lus10031808 [exp] 477 / 4e-164 AT2G44480 560 / 0.0 beta glucosidase 17 (.1.2) Lus10019531 [exp] 461 / 1e-157 AT2G44480 597 / 0.0 beta glucosidase 17 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.T085301 [exp] 506 / 2e-175 AT5G44640 575 / 0.0 beta glucosidase 13 (.1) Potri.003G211100 [exp] 506 / 2e-175 AT5G44640 569 / 0.0 beta glucosidase 13 (.1) Potri.001G015100 [exp] 500 / 2e-173 AT5G44640 553 / 0.0 beta glucosidase 13 (.1) Potri.004G040700 [exp] 486 / 5e-168 AT5G44640 548 / 0.0 beta glucosidase 13 (.1) Potri.001G227300 [exp] 480 / 2e-165 AT2G44480 585 / 0.0 beta glucosidase 17 (.1.2) Potri.001G227200 [exp] 465 / 1e-159 AT2G44480 614 / 0.0 beta glucosidase 17 (.1.2) Potri.001G222904 [exp] 456 / 5e-156 AT2G44480 531 / 0.0 beta glucosidase 17 (.1.2) Potri.001G223300 [exp] 456 / 6e-156 AT2G44480 529 / 0.0 beta glucosidase 17 (.1.2) Potri.001G222900 [exp] 454 / 3e-155 AT2G44480 526 / 0.0 beta glucosidase 17 (.1.2) Potri.001G222704 [exp] 454 / 4e-155 AT2G44480 526 / 0.0 beta glucosidase 17 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF00232 [flax] [poplar] Glyco_hydro_1 Glycosyl hydrolase family 1
Representative CDS sequence Show only first row Show all	>Lus10036445 pacid=23174519 polypeptide=Lus10036445 locus=Lus10036445.g ID=Lus10036445.BGIv1.0 annot-version=v1.0 ATGAAGCTAGATCGTGTGATTTTGTTCCTATGGATTCCGATCCTCTTTGCAGTAGAAACCCTGGCAGGTTCAAGCATTCCCCAAAAATTCGACAGAAAAT CGCTTAAAGCGAGCCAGTTCCCACCGGATTTTCTCTTCGGCGCTGCAGTCGCGGCTTATCAGACTGAAGGTGCGGCAATGGAGGATGGTAGAGGACTAAG CATATGGGATGAGTTTAGTCATAAGCATCCAGAGAAAATAATAGATAAGACGAACGGAGACATAGCCGCTGATTCATATAATTTCTATAAGAAAGACATA GCTATGCTGAAGCAAATGGGCATGAAAGCATACAGATTTTCAATCTCTTGGACCAGAATATTGCCAAATGGGAAGCTCAGTGGGCGTGTAAATCAAAAGG GGGTTCAGCATTACAACGAGGTCATCAATGAGGTTATAGCGCAAGGCTTAATTCCCTTCGTTACGCTCGTCCATTTCGACCCCCCTCAAGCTTTGGAAGA CGAGTATGGCGGCTTCTTGAGCAAACAAATTGTGAACGACTTTCGGGATTTTGCGGACGTGTGCTTCAAAGAGTACGGAGACAGAGTGAAACACTGGATA ACAATAAACGAGCCCCTTACCTTCGTGTACGGTGGATACGCATCAGGCGGCATGGCTCCGGGGCGGGGCACCACCANNNNNNNNNNNNNNNNNNNNNNNC CCCCGCGCCCCCGCACCACCGCCGGTGAAAAGCAAAAGTGCGACGAAGGGAATTCAGCTGTCGAGCCTTATCTAGCCGCTCATAATCAACTTCTTGCTCA TGCTGCCGCCGTCACATTGTACCGAAAAAAATACCAGGCGACTCAAAAGGGTATGATATCAATAGTTTTGAACACAGATTGGTTTATTCCTTACACATCC AGTAAGGAAGACATCGATGCAGCACAAAGAGCCCTCGAATTTTGCTTGGGATGGTTTATGGACCCGGTTACCAAAGGAGATTACCCGAAAATTATGAAGG ATATTGTTGGGGATCGACTCCCAACATTTACCCCGGAAGAATCAGAATTACTGAAAGGATCACTGGATTTTCTAGGTCTTAACTATTACACCAGCCGATA CGCTTCTAATTACGCCGGACCGCCTCGCCTCCAATCCTACACCACCGATGTGAATGTCAACTTTACAACTGAACGCGACGGAAAGCTAATCGGCCCACCA ACGGCAGCGTTTTGGCTCTGTGTTTATCCAGAGGGATTAAAAAACGTACTGCTATACATAAAGGACAAATACAACAATCCACTCATCTACATTGCTGAAA ATGGCAAGTTGCCAAATTTCACTTTTAATCATCTAGATTTTTGGCGATGGCATATGGATACTCGTTCTATCCATTCAGGGCGAGACACATACGAGTTTCT GCTTGATGTGTACCGTGCCTGGGTTCCTGATGATGGGAAATTGGACTCGAAGGGTGGAGAACCACCCGCGGATCAGTTTCGAATTGATGCTCTGAGCGGA CATCTATCTTACATCAATATGGCAATCAAGGAAGGATCGAATGTGAAAGGGTACATGGCATGGTCGTTGATTGATAGCTACGAGTGGCAGTCAGGTTTCA CCACTCCTTTCGGCCTACATTATATCAATTTCAGTAATCCTTCGATACGGATTCCGAAACAATCAGCTCTCTGGTTCAAAGAGTTCCTCAGCCATTGA
AA sequence Show only first row Show all	>Lus10036445 pacid=23174519 polypeptide=Lus10036445 locus=Lus10036445.g ID=Lus10036445.BGIv1.0 annot-version=v1.0 MKLDRVILFLWIPILFAVETLAGSSIPQKFDRKSLKASQFPPDFLFGAAVAAYQTEGAAMEDGRGLSIWDEFSHKHPEKIIDKTNGDIAADSYNFYKKDI AMLKQMGMKAYRFSISWTRILPNGKLSGRVNQKGVQHYNEVINEVIAQGLIPFVTLVHFDPPQALEDEYGGFLSKQIVNDFRDFADVCFKEYGDRVKHWI TINEPLTFVYGGYASGGMAPGRGTTXXXXXXXXPPRPRTTAGEKQKCDEGNSAVEPYLAAHNQLLAHAAAVTLYRKKYQATQKGMISIVLNTDWFIPYTS SKEDIDAAQRALEFCLGWFMDPVTKGDYPKIMKDIVGDRLPTFTPEESELLKGSLDFLGLNYYTSRYASNYAGPPRLQSYTTDVNVNFTTERDGKLIGPP TAAFWLCVYPEGLKNVLLYIKDKYNNPLIYIAENGKLPNFTFNHLDFWRWHMDTRSIHSGRDTYEFLLDVYRAWVPDDGKLDSKGGEPPADQFRIDALSG HLSYINMAIKEGSNVKGYMAWSLIDSYEWQSGFTTPFGLHYINFSNPSIRIPKQSALWFKEFLSH

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G44450		BGLU15	beta glucosidase 15 (.1)		Lus10036445 [exp]	0	1
					Lus10002413 [exp]	5.8	1.0000
					Lus10001326 [exp]	6.4	1.0000
					Lus10014857 [exp]	9.5	1.0000
AT5G04350			Plant self-incompatibility pro...		Lus10029383 [exp]	10.9	1.0000
					Lus10027374 [exp]	11.0	1.0000
AT1G75660		AtXRN3, XRN3	5'-3' exoribonuclease 3 (.1)		Lus10033153 [exp]	11.7	1.0000
					Lus10026755 [exp]	12.8	1.0000
AT4G17260			Lactate/malate dehydrogenase f...		Lus10028931 [exp]	14.9	1.0000
AT4G35220			Cyclase family protein (.1)		Lus10019823 [exp]	15.0	1.0000
AT2G19110		ATHMA4, HMA4	ARABIDOPSIS HEAVY METAL ATPASE...		Lus10006956 [exp]	15.3	1.0000

Compare expression of checked genes

Lus10036445 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.