Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G36170 649 / 0 ATPRFB, HCF109 high chlorophyll fluorescent 109 (.1.2.3) AT1G56350 255 / 1e-79 Peptide chain release factor 2 (.1) AT3G57190 204 / 4e-61 PrfB3 peptide chain release factor 3, peptide chain release factor, putative (.1) AT3G62910 164 / 5e-46 APG3 ALBINO AND PALE GREEN, Peptide chain release factor 1 (.1) AT2G47020 132 / 2e-34 Peptide chain release factor 1 (.1.2) AT1G33330 59 / 2e-09 Class I peptide chain release factor (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041119 [exp] 734 / 0 AT5G36170 627 / 0.0 high chlorophyll fluorescent 109 (.1.2.3) Lus10031411 [exp] 253 / 3e-79 AT1G56350 660 / 0.0 Peptide chain release factor 2 (.1) Lus10010922 [exp] 246 / 4e-76 AT1G56350 646 / 0.0 Peptide chain release factor 2 (.1) Lus10005944 [exp] 159 / 7e-44 AT3G62910 644 / 0.0 ALBINO AND PALE GREEN, Peptide chain release factor 1 (.1) Lus10029444 [exp] 148 / 1e-39 AT3G62910 632 / 0.0 ALBINO AND PALE GREEN, Peptide chain release factor 1 (.1) Lus10009980 [exp] 131 / 1e-33 AT2G47020 603 / 0.0 Peptide chain release factor 1 (.1.2) Lus10038039 [exp] 127 / 3e-32 AT2G47020 600 / 0.0 Peptide chain release factor 1 (.1.2) Lus10008558 [exp] 56 / 3e-08 AT1G33330 267 / 2e-89 Class I peptide chain release factor (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G075800 [exp] 652 / 0 AT5G36170 671 / 0.0 high chlorophyll fluorescent 109 (.1.2.3) Potri.013G009200 [exp] 252 / 1e-78 AT1G56350 676 / 0.0 Peptide chain release factor 2 (.1) Potri.006G045200 [exp] 248 / 1e-77 AT3G57190 426 / 7e-148 peptide chain release factor 3, peptide chain release factor, putative (.1) Potri.014G133400 [exp] 170 / 5e-48 AT3G62910 549 / 0.0 ALBINO AND PALE GREEN, Peptide chain release factor 1 (.1) Potri.014G114000 [exp] 139 / 1e-36 AT2G47020 579 / 0.0 Peptide chain release factor 1 (.1.2) Potri.010G181600 [exp] 85 / 2e-20 AT5G36170 88 / 2e-22 high chlorophyll fluorescent 109 (.1.2.3) Potri.002G188200 [exp] 68 / 3e-12 AT2G47020 380 / 3e-130 Peptide chain release factor 1 (.1.2) Potri.019G063800 [exp] 61 / 4e-10 AT1G33330 211 / 3e-68 Class I peptide chain release factor (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03462 [flax] [poplar] PCRF PCRF domain CL0337 [flax] [poplar] RF PF00472 [flax] [poplar] RF-1 RF-1 domain
Representative CDS sequence Show only first row Show all	>Lus10036446 pacid=23174513 polypeptide=Lus10036446 locus=Lus10036446.g ID=Lus10036446.BGIv1.0 annot-version=v1.0 ATGGATGGCCTAATGCGTTCCTCCATAGACTCATATCCTCCGATCTTAGCTTCAACTCTCAAACCTTCATCCCATAAACCATCACTTATCCTCCGACAAA GTTCCCACCTTTCATCTTCGTTCTTCAATTCCACCACGCTCATCGCTTTATCCACTCCCTGTCGTCGGCTCCCTTCATTCGTTGTCCAAGCTGCAGCACC AGAGGTTGAATCAGAGACGAGAGAATGGGGAATCCAAGAGTTTTACAGCTTAAGGAAGGAAGTGGAAGCTGCATCGGAGCGGGTTGAGGATGTTAGAGCC TCCGCTGGGCTGCAGCAATTGGAACAAGAGATCGTTGATTTGGAGTCGAAAGCAGCTGATAGCTCCTTTTGGGATGATCAATCGGAAGCCCAGAAGACCC TTTCAGCCTTAACTGATGTCAAAGAGAAGATGAAGTTGCTTACTGAGTTTGAAACCAAGGTTGAAGATGCAGAAACTATAGTAAAGCTTACAGAGGAGAT GGACTCAATAGACTCTTCACTTCTTGAAGAGGCTTCCACTATTGTTAAAGACTTAAACAAGACATTGGACAAGTATGAGGTGACTCAACTGCTTTCTGGT CCTTACGATAAAGAAGGTGCGGTTATTTCAATCACAGCTGGCGCCGGAGGCACTGATGCGCAGGACTGGGCTGAGATGCTTCTAAGAATGTATGTGAGAT GGGGAGAGAATCAAGGATACAAAACGAAAGTGGTTGAGAAATCGCCTGGGGAGGAAGCTGGGATCAAGTCTGTGACGATTGAACTCGAAGGGAGGTATGC GTATGGTTATATATCTGGGGAGAAAGGAACTCACAGGATAGTGCGACAGTCTCCTTTCAATTCTAAAGGTCTTCGTCAGACGAGCTTTGCTGGTGTAGAA GTAATGCCTCTTCTTCCTGAAGAGTCGGTGTTAGTTGATATACCTGAGGAGGACCTGGAATGGAATTTTTCAAGAGCAGGTGGGAAAGGAGGCCAAAATG TAAATAAAGTTGAAAGTGCTGTCAGGCTTACCCACATTCCTACTGGTGTCACAGTTCGCTGCACAGAGGAGAGATCCCAGTTAGCGAACAAGAACAAAGC ACTGAGCCGGCTGAAAGCGAAACTATTGGTGATCGCGGTGGAACAGAGAGCCTCCGAGATCAAGGAAATCAGGGGAGATGCAGTGAAGGCCGAATGGGGA CAGCAGATCCGAAACTACGTCTTCCATCCTTATAAGCTCGTGAAAGATGTGCGAACCGCAGTCGAGACCTCGGACATTGCATCTGTTATGGATGGCGAGT TGGATTCCTTCATCAAAGCGTATCTCAAGCGCAAATATACTCTGGCAATGTCTTCCACCTAA
AA sequence Show only first row Show all	>Lus10036446 pacid=23174513 polypeptide=Lus10036446 locus=Lus10036446.g ID=Lus10036446.BGIv1.0 annot-version=v1.0 MDGLMRSSIDSYPPILASTLKPSSHKPSLILRQSSHLSSSFFNSTTLIALSTPCRRLPSFVVQAAAPEVESETREWGIQEFYSLRKEVEAASERVEDVRA SAGLQQLEQEIVDLESKAADSSFWDDQSEAQKTLSALTDVKEKMKLLTEFETKVEDAETIVKLTEEMDSIDSSLLEEASTIVKDLNKTLDKYEVTQLLSG PYDKEGAVISITAGAGGTDAQDWAEMLLRMYVRWGENQGYKTKVVEKSPGEEAGIKSVTIELEGRYAYGYISGEKGTHRIVRQSPFNSKGLRQTSFAGVE VMPLLPEESVLVDIPEEDLEWNFSRAGGKGGQNVNKVESAVRLTHIPTGVTVRCTEERSQLANKNKALSRLKAKLLVIAVEQRASEIKEIRGDAVKAEWG QQIRNYVFHPYKLVKDVRTAVETSDIASVMDGELDSFIKAYLKRKYTLAMSST

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G36170		ATPRFB, HCF109	high chlorophyll fluorescent 1...		Lus10036446 [exp]	0	1
AT3G57180		BPG2	BRASSINAZOLE\(BRZ\) INSENSITIV...		Lus10035420 [exp]	2.8	0.8898
AT5G66055		EMB16, EMB2036,...	EMBRYO DEFECTIVE 2036, EMBRYO ...		Lus10028399 [exp]	3.3	0.9178
AT5G52010	C2H2ZnF		C2H2-like zinc finger protein ...		Lus10018729 [exp]	3.9	0.8897
AT3G19220		CYO1 ,SCO2	SNOWY COTYLEDON 2, SHI-YO-U ME...		Lus10014051 [exp]	5.8	0.8765
AT5G18570		EMB3138, ATOBGL...	EMBRYO DEFECTIVE 3138, EMBRYO ...		Lus10034166 [exp]	6.3	0.8863
AT2G18710		SCY1	SECY homolog 1 (.1)		Lus10023202 [exp]	6.3	0.9171
AT3G25410			Sodium Bile acid symporter fam...		Lus10038237 [exp]	6.9	0.9089
AT2G36000		EMB3114	EMBRYO DEFECTIVE 3114, Mitocho...		Lus10004219 [exp]	9.0	0.8676
AT5G15390			tRNA/rRNA methyltransferase (S...		Lus10032993 [exp]	9.7	0.8509
AT1G76730			NagB/RpiA/CoA transferase-like...		Lus10028565 [exp]	11.0	0.8838

Compare expression of checked genes

Lus10036446 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.