Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G03300 1351 / 0 ATDCL2, DCL2 dicer-like 2 (.1.2.3) AT5G20320 555 / 9e-172 DCL4, ATDCL4 dicer-like 4 (.1.2) AT1G01040 322 / 4e-90 SIN1, EMB76, EMB60, CAF, ASU1, SUS1, DCL1, ATDCL1 SHORT INTEGUMENTS 1, EMBRYO DEFECTIVE 76, EMBRYO DEFECTIVE 60, CARPEL FACTORY, ABNORMAL SUSPENSOR 1, dicer-like 1 (.1.2) AT3G43920 287 / 5e-79 DCL3, ATDCL3 dicer-like 3 (.1.2.3) AT4G15417 112 / 5e-27 ATRTL1 RNAse II-like 1 (.1) AT3G20420 107 / 2e-24 RTL2, ATRTL2 RNASEIII-LIKE 2, RNAse THREE-like protein 2 (.1) AT5G45150 100 / 6e-21 RTL3 RNAse THREE-like protein 3 (.1) AT1G35530 66 / 1e-10 DEAD/DEAH box RNA helicase family protein (.1.2) AT3G61240 45 / 0.0005 DEA(D/H)-box RNA helicase family protein (.1), DEA(D/H)-box RNA helicase family protein (.2) AT5G62190 45 / 0.0006 PRH75 DEAD box RNA helicase (PRH75) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016367 [exp] 610 / 0 AT3G43920 1457 / 0.0 dicer-like 3 (.1.2.3) Lus10019588 [exp] 407 / 4e-122 AT5G20320 1152 / 0.0 dicer-like 4 (.1.2) Lus10030177 [exp] 327 / 4e-97 AT1G01040 1138 / 0.0 SHORT INTEGUMENTS 1, EMBRYO DEFECTIVE 76, EMBRYO DEFECTIVE 60, CARPEL FACTORY, ABNORMAL SUSPENSOR 1, dicer-like 1 (.1.2) Lus10019757 [exp] 305 / 1e-84 AT3G43920 1379 / 0.0 dicer-like 3 (.1.2.3) Lus10005142 [exp] 287 / 6e-79 AT1G01040 2012 / 0.0 SHORT INTEGUMENTS 1, EMBRYO DEFECTIVE 76, EMBRYO DEFECTIVE 60, CARPEL FACTORY, ABNORMAL SUSPENSOR 1, dicer-like 1 (.1.2) Lus10030176 [exp] 276 / 3e-77 AT1G01040 972 / 0.0 SHORT INTEGUMENTS 1, EMBRYO DEFECTIVE 76, EMBRYO DEFECTIVE 60, CARPEL FACTORY, ABNORMAL SUSPENSOR 1, dicer-like 1 (.1.2) Lus10005141 [exp] 188 / 2e-52 AT1G01040 569 / 0.0 SHORT INTEGUMENTS 1, EMBRYO DEFECTIVE 76, EMBRYO DEFECTIVE 60, CARPEL FACTORY, ABNORMAL SUSPENSOR 1, dicer-like 1 (.1.2) Lus10019587 [exp] 174 / 8e-46 AT5G20320 556 / 0.0 dicer-like 4 (.1.2) Lus10000182 [exp] 115 / 7e-28 AT4G15417 230 / 5e-75 RNAse II-like 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G075900 [exp] 1561 / 0 AT3G03300 1567 / 0.0 dicer-like 2 (.1.2.3) Potri.010G181400 [exp] 1507 / 0 AT3G03300 1548 / 0.0 dicer-like 2 (.1.2.3) Potri.006G188800 [exp] 629 / 0 AT5G20320 1733 / 0.0 dicer-like 4 (.1.2) Potri.018G047500 [exp] 333 / 9e-94 AT3G43920 1518 / 0.0 dicer-like 3 (.1.2.3) Potri.002G181400 [exp] 333 / 2e-93 AT1G01040 2835 / 0.0 SHORT INTEGUMENTS 1, EMBRYO DEFECTIVE 76, EMBRYO DEFECTIVE 60, CARPEL FACTORY, ABNORMAL SUSPENSOR 1, dicer-like 1 (.1.2) Potri.002G226700 [exp] 130 / 4e-33 AT4G15417 244 / 1e-80 RNAse II-like 1 (.1) Potri.011G086700 [exp] 115 / 2e-27 AT3G20420 356 / 9e-122 RNASEIII-LIKE 2, RNAse THREE-like protein 2 (.1) Potri.013G109600 [exp] 60 / 1e-08 AT1G35530 1234 / 0.0 DEAD/DEAH box RNA helicase family protein (.1.2) Potri.015G133400 [exp] 44 / 0.0007 AT5G62190 785 / 0.0 DEAD box RNA helicase (PRH75) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0539 [flax] [poplar] RNase_III PF00636 [flax] [poplar] Ribonuclease_3 Ribonuclease III domain CL0196 [flax] [poplar] DSRM PF03368 [flax] [poplar] Dicer_dimer Dicer dimerisation domain CL0023 [flax] [poplar] P-loop_NTPase PF00271 [flax] [poplar] Helicase_C Helicase conserved C-terminal domain CL0638 [flax] [poplar] PAZ PF02170 [flax] [poplar] PAZ PAZ domain CL0023 [flax] [poplar] P-loop_NTPase PF00270 [flax] [poplar] DEAD DEAD/DEAH box helicase
Representative CDS sequence Show only first row Show all	>Lus10036447 pacid=23174539 polypeptide=Lus10036447 locus=Lus10036447.g ID=Lus10036447.BGIv1.0 annot-version=v1.0 ATGGCGATAGAGCAGAACACAATATCCTACTTGGAGACTGGCAGTGGCAAGACCCTTATAGCCGTGATGCTGCTTCGTCATTATTCGTTTCATCTGCGCA AACCATCTCCGTTCGTTGCTGTTTTCTTGGTTCCTCAAGTTGTTCTAGTACGCCAGCAAGCTGCGGTTGTTCAAACGCACACTGATTTGAAAGTGGGGAT GTACTGGGGTGAGATGGGAGTTGATTTCTGGGATGGTGCTATCTGGAAGCAGGAAGTTGAGAAACATGAGGTGCTTGTTATGACGCCTCAAATTCTGCTT AATTCCTTGAGGCATGGCTTTCTCAAGCTGGATTTCATCAAGGTTTTGATACTTGATGAATGCCACCACGCCAGTGGTAACCACCCGTACGCCTGCATAA TGAAGGAATTCTATCATCCGATGCTGATCACCGATAGTTGTGATGTTCCGAGGATATTTGGGATGACGGCTTCACTTATAAAATCAAAATGTACGGTATC CGAAATAGACTACTGGGGCAAGATTCGAAAGCTTGAGACAATGATGCATTCAAAGGTTTACACATGCATCAGTGATTCAGTGATTTCGGAATATGTACCA TTTTCAACCCCGAAATTCATATTTTACGAAGATTTGGATGTACAGTCTGATCTATCTGAACGTCTAACAAACGAGTTGGACATGTTGAAAACAAAGCATG AGAGTTTGTTGGATCGTTCAGATCTTACAGAGTCTTCCTTAGCATCTACAAAGAAGAAACTGAGTAGAACACATTGCTCCTTGCTGTATTGTTTATATGA ACTGGGTCTCTGGTCGGCTTTCAAGGCTGCAAAATTCATGTCTAGTTGTGAATATGCTGGGATGCTATGGGGTAAATTAGATATATTTGGCGAACGATCA GTTAAGGATTTCAGTTTGGATGCATCAATGGCATTTAAAAAATGCATTCCAGACGAATGGACCGTTGGAGGTGATGTAACGCCTAATATCGATTCTCCAT TTCTAAGTTCCAAAGTCACTTGTCTGAGACAGTCTCTTCTCAACTACAGGAATATCAAGGATATCAGATGCATCATATTTGTGGAAAGGGTCATTACATC CGTTGTCCTTCAATTACTATTGAGCGAGCTACTTCCTGAACAAGTAAGTTGGAAGACTAAGTACATAGCGGGAAACAACTCGGGGGTACAATCCCAGTCA CGGAAAACACAAAATGAAATTGTGGAAGAATTTCGTAAAGGCATGGTTAATATCATTGTTGCGACCTCCATTCTGGAAGAAGGTTTAGATGTTCAAAGCT GTAACTTGGTGATCAGATTTGATCCCTCTGCTACTGTAAGTAGCTTTATCCAGTCACGTGGTCGTGCAAGGATGCAGAATTCAGAGTATTTGCTAATGCT TAGAAGTGGGGACATGTCAACACATTCCCGATTACAAAAGTATCTCTCTAGCGGACAAATAATGCGAAGCGAGTCACTCAGACATGCTTCTACTCCATGT GCTCCACTTGGAAGTGAATTTTATGATGAAGATACATATCGTGTCGAAAGCACTGGTGCAGTCGTCACATCTACTTCCAGCATTACATTGATATACTTCT ACTGTTCTCGTCTTCCTTCCGACGGGTTACCGTTACAACCTATTAACGTGCAAGGAAATATCAAGTCTCTGAAACAGAAAGCATGCCTCGAAGCATGTAT AAAGCTTCATCAGATCGGTGCATTAACCGATAACCTTGTTCCTGATACAGTTGCTGAAAAATTGGTGGATCAAGAACTCGGCGAAGAGTCCAAGAATGAT AACCATCCTGTTTACTTTCCAGCTGATTTTGTTCGCAATCGTCAGGGTCTGGGAAGCAATAGTTACTACTGTTATTTGATCCAACTAAGCCTACAGTTTG ACAATTTCAGCTTAGAAACTGATAGAGGCACAGTGGCAGTCAAGTTGAGTTACATTGGAAATCTGGATATGAAACCAACGATGGTTAATATGTGTAGGAG GTTCCAGATGACTATTCTAGATCTTCTTATCAATCATAGCTTGGATAAGCTGAGTGGAAATTTCGAAGAATCGGAGCAGAGTGATCGTCTGGATTATTTC CTACTTCCGGCGGTTGCTTCGACACCGAAACCTATCGTTGATTGGACATGCGTGACATCTGTTCTGTTTAATTATGATCAAGCTTGGGGCGATCAGAATA AATGCAAATTCCATGGTAATACTAGAGCTTTTGAAACAAAAGATGGACCAGCTTGCAAATGCATGCTTGAGAATTCATTGATTCACACGCCGCATAATGG AAAATTTTACTGTATTCTCGGTGTTTCCAATGAGTTGACCGCCAATTCCTTCTTGAGCACGCGTGTGGGCGAAAGTATGACGTACAAGGACTACTATAAA ATGCGACATGGGCTTAGTTTACGGTATGATGAACAATCCTTACTCCGCGCTCGACAGATTTTTCCCGTGCTCAACCTTCTGCACAGATGTAAACAACAAA GGAAGGAAAAAGAATCTACAAATGCCTATGTGGACCTACCCCCTGAGCTATGTCGCATAATTATGTCACCAATATCAATCAGCACTTTTTATTCATATAC ATTCATCCCATCGGTTATGCACCGGCTCGAATCCTTATTGATTGCTTTCAACCTAAAGAAGATGCATTTGGATAACATGCATAATGTTGCTATTCCATCT GAGAAGATGCTCGAAGCCATCACTACAAAGACTTGCCAAGAGAAAATTCACCTGGAATCACTGGAGACTCTCGGAGATTCTTTTCTCAAATACGCTGCTT GTCAACATCTCTTCAGGGCCCACCGTAATCACCACGAAGGCATTCTAAGTATCAAGAAGGATAGAATTGTGTCTAATGCCTCGCTTTTCTTGGTTGGATA TCATATCAAACTTCCGGGTTTCATTCGAGATGCTCCCTTCGATCCGAAAACCTGGATGATTCCCGGTTCCAAAGTCGAGGACTACTCTTTAAGCGAAGAG TTGTTACCAAATTCTAAGAAAATATTCGTCAGCGGAACTAGGACGTTGAAACTTAAGAGAGTCGCAGATGTCGTCGAAGCCCTTATTGGTGCATGCTTAA GCTCAGGAGGCGAAACAGCTACCTTGCAATTTATGAATTCGATCGGTATAACGGTAGATTTTGATACGTCTCCACTCGAGAGACACTTTCAACTGAATCC TGAGAGGCTTATAAATGTATCCCTGTTGGAGTCGGTATTAAACTATACATTTAAAGATCGGACGCTCCTAGTCGAAGCTCTGACCCACGGTTCCTACATG CTTCCCGAGATCCCAAGATGCTACCAGAGACTGGAATTTCTGGGAGACTCAGTCTTGGATTATTTAATCACTGTGCACATATACATGAATCATCCTGACA TCTCACCAGGCTTGTTAACTGATATGAGGTCGGCTTCAGTGAACAACGACTGTTACGCAAGATCGGCTCTCAAGAGCGAGCTGCATAAGCACATACTCCA CGCATCAACGAGACTTCACAACGACATCAGCCGGTGCATTGCAGACTCAAAGGACGTATCTTCAGAACCAACGTTTGGCTGGGATTCTGATACTTTTTAC CCAAAGGTCCTGGGAGATATCATGGAGTCGTTGGCAGGAGCTATACTCGTCGATTCGGGGTACGACAAGGAGGTAGTTTATCGGAGCATGTTGCCGTTGC TGCAGCCACTAGTTACACCGGAGACGCTGAGGTTAGAGCCGGTGAGAGAGCTGACCGAGCTGTGTCAAAGAGAGCACCTATTGCAGAGCAAACCTGTCGT CGTCCGTGGAGATGGCGTTACATCTGTTACCGTGCAAGTCGAAGATGGAAACGGTGCCGTACTGTCGCACACGTCAACTGCGGCAGATAAGAAAATGGCC AAGCGGCTGGCTTCCAAGGAAATTCTCAAGGCCCTCAGGGAAAGTGGGGTTTTTACGGGTAATCGAAATTGA
AA sequence Show only first row Show all	>Lus10036447 pacid=23174539 polypeptide=Lus10036447 locus=Lus10036447.g ID=Lus10036447.BGIv1.0 annot-version=v1.0 MAIEQNTISYLETGSGKTLIAVMLLRHYSFHLRKPSPFVAVFLVPQVVLVRQQAAVVQTHTDLKVGMYWGEMGVDFWDGAIWKQEVEKHEVLVMTPQILL NSLRHGFLKLDFIKVLILDECHHASGNHPYACIMKEFYHPMLITDSCDVPRIFGMTASLIKSKCTVSEIDYWGKIRKLETMMHSKVYTCISDSVISEYVP FSTPKFIFYEDLDVQSDLSERLTNELDMLKTKHESLLDRSDLTESSLASTKKKLSRTHCSLLYCLYELGLWSAFKAAKFMSSCEYAGMLWGKLDIFGERS VKDFSLDASMAFKKCIPDEWTVGGDVTPNIDSPFLSSKVTCLRQSLLNYRNIKDIRCIIFVERVITSVVLQLLLSELLPEQVSWKTKYIAGNNSGVQSQS RKTQNEIVEEFRKGMVNIIVATSILEEGLDVQSCNLVIRFDPSATVSSFIQSRGRARMQNSEYLLMLRSGDMSTHSRLQKYLSSGQIMRSESLRHASTPC APLGSEFYDEDTYRVESTGAVVTSTSSITLIYFYCSRLPSDGLPLQPINVQGNIKSLKQKACLEACIKLHQIGALTDNLVPDTVAEKLVDQELGEESKND NHPVYFPADFVRNRQGLGSNSYYCYLIQLSLQFDNFSLETDRGTVAVKLSYIGNLDMKPTMVNMCRRFQMTILDLLINHSLDKLSGNFEESEQSDRLDYF LLPAVASTPKPIVDWTCVTSVLFNYDQAWGDQNKCKFHGNTRAFETKDGPACKCMLENSLIHTPHNGKFYCILGVSNELTANSFLSTRVGESMTYKDYYK MRHGLSLRYDEQSLLRARQIFPVLNLLHRCKQQRKEKESTNAYVDLPPELCRIIMSPISISTFYSYTFIPSVMHRLESLLIAFNLKKMHLDNMHNVAIPS EKMLEAITTKTCQEKIHLESLETLGDSFLKYAACQHLFRAHRNHHEGILSIKKDRIVSNASLFLVGYHIKLPGFIRDAPFDPKTWMIPGSKVEDYSLSEE LLPNSKKIFVSGTRTLKLKRVADVVEALIGACLSSGGETATLQFMNSIGITVDFDTSPLERHFQLNPERLINVSLLESVLNYTFKDRTLLVEALTHGSYM LPEIPRCYQRLEFLGDSVLDYLITVHIYMNHPDISPGLLTDMRSASVNNDCYARSALKSELHKHILHASTRLHNDISRCIADSKDVSSEPTFGWDSDTFY PKVLGDIMESLAGAILVDSGYDKEVVYRSMLPLLQPLVTPETLRLEPVRELTELCQREHLLQSKPVVVRGDGVTSVTVQVEDGNGAVLSHTSTAADKKMA KRLASKEILKALRESGVFTGNRN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G03300		ATDCL2, DCL2	dicer-like 2 (.1.2.3)		Lus10036447 [exp]	0	1
AT1G76630			Tetratricopeptide repeat (TPR)...		Lus10025170 [exp]	1.7	0.8373
AT1G15240			Phox-associated domain;Phox-li...		Lus10035877 [exp]	2.8	0.8321
AT3G61960			Protein kinase superfamily pro...		Lus10030182 [exp]	3.6	0.7918
AT5G08110			nucleic acid binding;ATP-depen...		Lus10007978 [exp]	4.9	0.8296
AT3G61740		SDG14, ATX3	SET domain protein 14 (.1.2)		Lus10012626 [exp]	8.3	0.8307
AT4G36690		ATU2AF65A	U2 snRNP auxilliary factor, la...		Lus10041725 [exp]	11.8	0.7904
AT5G23150		HUA2	ENHANCER OF AG-4 2, Tudor/PWWP...		Lus10010197 [exp]	13.8	0.8273
AT1G55750			BSD domain (BTF2-like transcri...		Lus10007089 [exp]	13.8	0.8058
AT5G08470		EMB2817, PEX1	EMBRYO DEFECTIVE 2817, peroxis...		Lus10023123 [exp]	14.7	0.7923
AT1G63490			transcription factor jumonji (...		Lus10008495 [exp]	16.5	0.8125

Compare expression of checked genes

Lus10036447 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.