Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G21080 447 / 7e-156 unknown protein AT3G20300 262 / 6e-83 Protein of unknown function (DUF3537) (.1) AT1G50630 241 / 8e-75 Protein of unknown function (DUF3537) (.1), Protein of unknown function (DUF3537) (.2) AT4G03820 202 / 3e-60 Protein of unknown function (DUF3537) (.1), Protein of unknown function (DUF3537) (.2) AT4G22270 196 / 7e-58 ATMRB1 ARABIDOPSIS MEMBRANE RELATED BIGGER1, Protein of unknown function (DUF3537) (.1) AT1G67570 196 / 1e-57 Protein of unknown function (DUF3537) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002334 [exp] 281 / 2e-90 AT3G20300 616 / 0.0 Protein of unknown function (DUF3537) (.1) Lus10009722 [exp] 278 / 8e-87 AT3G20300 626 / 0.0 Protein of unknown function (DUF3537) (.1) Lus10033919 [exp] 238 / 8e-74 AT3G20300 476 / 2e-166 Protein of unknown function (DUF3537) (.1) Lus10024308 [exp] 214 / 2e-64 AT3G20300 473 / 5e-165 Protein of unknown function (DUF3537) (.1) Lus10011371 [exp] 192 / 5e-56 AT1G67570 529 / 0.0 Protein of unknown function (DUF3537) (.1) Lus10043011 [exp] 175 / 8e-50 AT1G67570 404 / 2e-138 Protein of unknown function (DUF3537) (.1) Lus10006430 [exp] 150 / 2e-40 AT1G67570 435 / 3e-150 Protein of unknown function (DUF3537) (.1) Lus10032513 [exp] 126 / 3e-32 AT1G67570 319 / 4e-106 Protein of unknown function (DUF3537) (.1) Lus10032512 [exp] 57 / 3e-10 AT1G67570 94 / 5e-24 Protein of unknown function (DUF3537) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G279200 [exp] 514 / 0 AT2G21080 453 / 6e-158 unknown protein Potri.018G002700 [exp] 513 / 0 AT2G21080 447 / 9e-156 unknown protein Potri.001G356200 [exp] 261 / 7e-83 AT3G20300 613 / 0.0 Protein of unknown function (DUF3537) (.1) Potri.015G092200 [exp] 191 / 9e-56 AT1G67570 405 / 8e-139 Protein of unknown function (DUF3537) (.1) Potri.012G094700 [exp] 186 / 4e-54 AT1G67570 417 / 2e-143 Protein of unknown function (DUF3537) (.1) Potri.008G178100 [exp] 181 / 8e-52 AT1G67570 491 / 3e-172 Protein of unknown function (DUF3537) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF12056 [flax] [poplar] DUF3537 Protein of unknown function (DUF3537)
Representative CDS sequence Show only first row Show all	>Lus10036448 pacid=23174624 polypeptide=Lus10036448 locus=Lus10036448.g ID=Lus10036448.BGIv1.0 annot-version=v1.0 ATGAACGGCCACGATGAATTACAACAAGAAGAAGAACAAACTCTGTTACCAAAGTCCTTCTTGTTGACCGACGAGCTGCGCAACTTCAGAATAAGCCTCA AATGGTGTGCTCTCGACCACTCTTCCCGTCTTGCGAAATCAATCTCGTTCCTCGCTTTCTTGTTCTTCTCAGTCGTGATCCCGGTCCTCACCATCCTCTT CTACGAGGACAAACACGACGATGACCTCCCTGGTCCCTTGTCTTTCAACAACCTGGTTCAGGTACCGGAATCGGGCTTGGCGTTGATCTCGTTCCTGACT ATGGCTTCCTTCTTCCGTCGCTATGGCCTCCGCCAGCTGCTCTTTCTCGATGGCCTCCACCGCGACTCTGATCAAGTCAGATCAGGATACTCCAAGGAGC TGGACAAGGCATTCCGCTACCTCGCAGCGATACTCCTCCCGTCCTTCTTCCTCGAGCTCGCCCACAAGCTCGTGTTCTTCTCCACGGTCCAATCCACCAT CCCGTTCTCCTCGAAATCCGCGGTACTCCACTCGGTGAACACAATAATGTTCTTCATGGTGATGGGGTCATGGGTCTACCGAGCCGGAGTGTTCCTCCTC GTATGCGTCTTGTTCCGGCTAACCTGCGAGCTTCAGATCCTGAGGCTGCAGGGCCTCCACCAGATGTTCCAAGGGTTCGAACAGGATTCGTGCGAAGTAA TATTCGAGGAGCATGTGAGGATCAAGAAGCAGCTGTGCTTCACTAGTCATAGGTACCGGTTCTTCATCATTGCTTGCTTGGTTGCCGTCACGGTGAACCA GTTGGGAGCTCTTCTTCTCATTCTTGCTTATGATTCCCACAAGAGCTTCTTCAACTCCGGCGACATTGTTATATGCTCGGCAGTGCAGTTAAGTGGGCTG TTCATGTGCCTGATGGGTGCGGCGAGAATAACACATAGAGCTCAGGCCATTGTTTCCATCGCTACACGTTGGCATATGATAGTCACTGCCACCACCACCA CCATGGCGGAGCACAAAGGACCGAAACCGCAAACCACCGTGGAAGGTACGCTTCCGTCGTCGGAAGATACCATGGTCGCCGGTGACGCTGATACATCCTC ATCCTCCCAAATTGTCATCTCCATTCCTGGCGATGATCGTGGAGCCTTGTCGTCTTCTTCTTTCCAAACCAGGCAAGCTCTAGTGGCGTATCTGCAACAC AATAACGGAGGGATAACGCTGTTTGGGTTTGCGTTGGATCGAGGATTGCTTCACACCCTCTTCGTCTTTGAGTTCTCTTTGGTGCTCTGGATACTTAGTA AAGTTGTCGTACTCTCTTGA
AA sequence Show only first row Show all	>Lus10036448 pacid=23174624 polypeptide=Lus10036448 locus=Lus10036448.g ID=Lus10036448.BGIv1.0 annot-version=v1.0 MNGHDELQQEEEQTLLPKSFLLTDELRNFRISLKWCALDHSSRLAKSISFLAFLFFSVVIPVLTILFYEDKHDDDLPGPLSFNNLVQVPESGLALISFLT MASFFRRYGLRQLLFLDGLHRDSDQVRSGYSKELDKAFRYLAAILLPSFFLELAHKLVFFSTVQSTIPFSSKSAVLHSVNTIMFFMVMGSWVYRAGVFLL VCVLFRLTCELQILRLQGLHQMFQGFEQDSCEVIFEEHVRIKKQLCFTSHRYRFFIIACLVAVTVNQLGALLLILAYDSHKSFFNSGDIVICSAVQLSGL FMCLMGAARITHRAQAIVSIATRWHMIVTATTTTMAEHKGPKPQTTVEGTLPSSEDTMVAGDADTSSSSQIVISIPGDDRGALSSSSFQTRQALVAYLQH NNGGITLFGFALDRGLLHTLFVFEFSLVLWILSKVVVLS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G21080			unknown protein		Lus10036448 [exp]	0	1
AT1G12480		SLAC1, RCD3, CD...	SLOW ANION CHANNEL-ASSOCIATED ...		Lus10006678 [exp]	1.0	0.9483
AT3G16370			GDSL-like Lipase/Acylhydrolase...		Lus10006856 [exp]	4.0	0.9118
AT5G54160		ATOMT1	O-methyltransferase 1 (.1)		Lus10006146 [exp]	5.3	0.8634
AT1G20510		OPCL1	OPC-8:0 CoA ligase1 (.1.2)		Lus10015999 [exp]	6.9	0.8730
AT5G62470	MYB	ATMYB96, mybcov...	myb domain protein 96 (.1.2)		Lus10002056 [exp]	11.0	0.8723
AT3G43600		AtAO3, atAO-2, ...	Arabidopsis thaliana aldehyde ...		Lus10040474 [exp]	12.0	0.8568
AT5G57800		CER3, FLP1, YRE...	FACELESS POLLEN 1, ECERIFERUM ...		Lus10008895 [exp]	12.4	0.8793
AT2G27660			Cysteine/Histidine-rich C1 dom...		Lus10021061 [exp]	15.4	0.8505
AT1G75900		EXL3	GDSL-like Lipase/Acylhydrolase...		Lus10028425 [exp]	17.3	0.8571
AT4G30080	ARF	ARF16	auxin response factor 16 (.1)		Lus10026510 [exp]	18.0	0.8227

Compare expression of checked genes

Lus10036448 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.