Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G36050 646 / 0 Endoplasmic reticulum vesicle transporter protein (.1.2) AT1G22200 595 / 0 Endoplasmic reticulum vesicle transporter protein (.1.2) AT3G22290 225 / 5e-70 Endoplasmic reticulum vesicle transporter protein (.1) AT3G20560 82 / 1e-16 ATPDI12, ATPDIL5-3 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 12, PDI-like 5-3 (.1) AT1G50950 82 / 2e-16 Thioredoxin protein with domain of unknown function (DUF1692) (.1) AT4G27080 80 / 5e-16 ATPDI7, ATPDIL5-4 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 7, PDI-like 5-4 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036158 [exp] 591 / 0 AT1G36050 596 / 0.0 Endoplasmic reticulum vesicle transporter protein (.1.2) Lus10041121 [exp] 450 / 9e-159 AT1G36050 382 / 8e-133 Endoplasmic reticulum vesicle transporter protein (.1.2) Lus10003406 [exp] 348 / 5e-117 AT1G36050 325 / 2e-109 Endoplasmic reticulum vesicle transporter protein (.1.2) Lus10027795 [exp] 223 / 4e-69 AT3G22290 565 / 0.0 Endoplasmic reticulum vesicle transporter protein (.1) Lus10023828 [exp] 192 / 4e-57 AT3G22290 478 / 5e-170 Endoplasmic reticulum vesicle transporter protein (.1) Lus10035503 [exp] 184 / 2e-53 AT3G22290 442 / 1e-155 Endoplasmic reticulum vesicle transporter protein (.1) Lus10021024 [exp] 155 / 5e-43 AT3G22290 435 / 6e-153 Endoplasmic reticulum vesicle transporter protein (.1) Lus10041120 [exp] 92 / 2e-20 AT4G31270 98 / 3e-23 sequence-specific DNA binding transcription factors (.1) Lus10019611 [exp] 77 / 8e-15 AT4G27080 664 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 7, PDI-like 5-4 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G168800 [exp] 687 / 0 AT1G36050 724 / 0.0 Endoplasmic reticulum vesicle transporter protein (.1.2) Potri.002G094400 [exp] 660 / 0 AT1G36050 692 / 0.0 Endoplasmic reticulum vesicle transporter protein (.1.2) Potri.001G206100 [exp] 566 / 0 AT1G36050 540 / 0.0 Endoplasmic reticulum vesicle transporter protein (.1.2) Potri.003G023500 [exp] 547 / 0 AT1G36050 521 / 0.0 Endoplasmic reticulum vesicle transporter protein (.1.2) Potri.016G022800 [exp] 222 / 1e-68 AT3G22290 574 / 0.0 Endoplasmic reticulum vesicle transporter protein (.1) Potri.006G023900 [exp] 221 / 2e-68 AT3G22290 572 / 0.0 Endoplasmic reticulum vesicle transporter protein (.1) Potri.011G135500 [exp] 81 / 3e-16 AT4G27080 760 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 7, PDI-like 5-4 (.1.2) Potri.001G419300 [exp] 79 / 8e-16 AT3G20560 761 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 12, PDI-like 5-3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07970 [flax] [poplar] COPIIcoated_ERV Endoplasmic reticulum vesicle transporter
Representative CDS sequence Show only first row Show all	>Lus10036449 pacid=23174348 polypeptide=Lus10036449 locus=Lus10036449.g ID=Lus10036449.BGIv1.0 annot-version=v1.0 ATGGACGGCATGATGAGCAAGCTGAGGAGCTTGGACGCTTACCCGAAGATCAATGAAGATTTCTACAGCCGTACGCTTTCCGGCGGTCTTATTACCCTCG CCTCATCTGTCGTCATGCTTCTCCTTTTCATCTCCGAGCTACGATTGTATCTGCATACTGTCACAGAAACGAAGCTCGTGGTTGATACATCAAGAGGAGA AACTCTTCGGATCAATTTTGATGTGAGTTTCCCGGCCCTCCCTTGCTCAATTCTCAGTATTGATGCCATGGACATAAGTGGAGAACAACATCTTGATGTG AAACATGACATAATCAAGAAGAGACTAGACTCACATGGCAATGTAATAGAAGCACGGCCTGATGGAATTGGTGCTCCTAAGATTGAAAAGCCTTTGCAAA AACATGGTGGGAGGCTTGACCACAATGAGACATATTGTGGTTCATGCTTTGGCGCTGAAGAGTCAGATGACCATTGTTGTAATTCTTGTGAGGATGTTCG TGAAGCATATCGTAAGAAGGGCTGGGCACTGTCTAATCCAGATCTTATTGACCAGTGTAAAAGAGAAGGTTTTCTTCAGAAAATCAAAGAGGAAGAAGGT GAAGGGTGTAATGTGTATGGATTCCTTGAGGTTAATAAGGTAGCTGGTAATTTCCATTTTGCACCAGGGAAGAGTTTTCAACAATCAGGAGTTCATGTTC ATGATCTCCTGGCATTTCAGAAGGACACTTTCAATGTTAGTCACCATATTAACAGGCTATCATTTGGAGAATACTTTCCCGGGGTTGTAAATCCTCTTGA CGGTGTACTTTGGACTCAAGAATCTCCAAGTGGCATGTACCAGTACTTCATCAAGGTTGTGCCCACTGTGTACACTGATGTAAGCGGGCACACAATCCAA TCAAATCAGTTCTCTGTAACTGAACATTTTAGGAGTGCGGATGCTGGTCGGCTTCAGTCCCTCCCGGGAGTGGTCTTCTTCTATGATCTTTCTCCAATTA AGGTTACATTCATGGAGGAGTATGTGTCCTTCTTGCACTTCTTAACAAATATGTGTGCTATAGTTGGAGAAGAAGAAGAAGAAGCTCTGCCTCAGAACAG AGGAAGTACGGTGCTGTTGGGAGAGCAGAGGAGGTATAGCAGAGGGAGGAAGCCGAAAGCACTGGTGGAAGAAGAGAAGATGGCGGAGAAAGTTTATGAG ACGGCGCAGTTGATGCTAGCTCTAGCTAAAGGCGATGATGATGATGATGGTATTGATCATCCGCCATTGGAGCAAGCAGAGAGTCGGGGCTCCCCTGATT CATAG
AA sequence Show only first row Show all	>Lus10036449 pacid=23174348 polypeptide=Lus10036449 locus=Lus10036449.g ID=Lus10036449.BGIv1.0 annot-version=v1.0 MDGMMSKLRSLDAYPKINEDFYSRTLSGGLITLASSVVMLLLFISELRLYLHTVTETKLVVDTSRGETLRINFDVSFPALPCSILSIDAMDISGEQHLDV KHDIIKKRLDSHGNVIEARPDGIGAPKIEKPLQKHGGRLDHNETYCGSCFGAEESDDHCCNSCEDVREAYRKKGWALSNPDLIDQCKREGFLQKIKEEEG EGCNVYGFLEVNKVAGNFHFAPGKSFQQSGVHVHDLLAFQKDTFNVSHHINRLSFGEYFPGVVNPLDGVLWTQESPSGMYQYFIKVVPTVYTDVSGHTIQ SNQFSVTEHFRSADAGRLQSLPGVVFFYDLSPIKVTFMEEYVSFLHFLTNMCAIVGEEEEEALPQNRGSTVLLGEQRRYSRGRKPKALVEEEKMAEKVYE TAQLMLALAKGDDDDDGIDHPPLEQAESRGSPDS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G36050			Endoplasmic reticulum vesicle ...		Lus10036449 [exp]	0	1
AT4G24550			Clathrin adaptor complexes med...		Lus10003537 [exp]	3.7	0.8349
AT2G19160			Core-2/I-branching beta-1,6-N-...		Lus10006952 [exp]	4.2	0.8019
AT1G51590		MNS1, MANIB	ALPHA-MANNOSIDASE IB, alpha-ma...		Lus10034820 [exp]	7.5	0.8226
AT5G40450			unknown protein		Lus10022266 [exp]	8.2	0.8138
AT1G10210		ATMPK1	mitogen-activated protein kina...		Lus10033197 [exp]	10.1	0.8306
AT2G16880			Pentatricopeptide repeat (PPR)...		Lus10041421 [exp]	10.2	0.8048
AT5G55940		EMB2731	embryo defective 2731, Unchara...		Lus10032594 [exp]	11.0	0.7581
AT3G17920			Outer arm dynein light chain 1...		Lus10041988 [exp]	12.2	0.8103
AT1G60780		HAP13	HAPLESS 13, Clathrin adaptor c...		Lus10026688 [exp]	13.7	0.7949
AT3G42050			vacuolar ATP synthase subunit ...		Lus10020335 [exp]	15.0	0.7606

Compare expression of checked genes

Lus10036449 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.