Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G07900 172 / 9e-50 Mitochondrial transcription termination factor family protein (.1) AT5G64950 138 / 5e-37 Mitochondrial transcription termination factor family protein (.1) AT1G21150 132 / 8e-35 Mitochondrial transcription termination factor family protein (.1) AT1G61970 114 / 3e-28 Mitochondrial transcription termination factor family protein (.1.2) AT1G61980 110 / 1e-26 Mitochondrial transcription termination factor family protein (.1) AT1G61960 103 / 2e-24 Mitochondrial transcription termination factor family protein (.1) AT1G62010 103 / 2e-24 Mitochondrial transcription termination factor family protein (.1) AT1G61990 102 / 9e-24 Mitochondrial transcription termination factor family protein (.1) AT1G62120 100 / 4e-23 Mitochondrial transcription termination factor family protein (.1) AT3G46950 88 / 8e-19 Mitochondrial transcription termination factor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041122 [exp] 582 / 0 AT5G07900 166 / 2e-47 Mitochondrial transcription termination factor family protein (.1) Lus10008688 [exp] 184 / 1e-54 AT5G07900 197 / 2e-59 Mitochondrial transcription termination factor family protein (.1) Lus10040817 [exp] 169 / 1e-48 AT5G07900 225 / 6e-70 Mitochondrial transcription termination factor family protein (.1) Lus10016550 [exp] 162 / 4e-46 AT5G07900 219 / 9e-68 Mitochondrial transcription termination factor family protein (.1) Lus10004957 [exp] 146 / 3e-40 AT5G07900 238 / 4e-75 Mitochondrial transcription termination factor family protein (.1) Lus10004329 [exp] 137 / 7e-37 AT5G64950 238 / 2e-75 Mitochondrial transcription termination factor family protein (.1) Lus10040820 [exp] 131 / 2e-34 AT5G07900 221 / 2e-68 Mitochondrial transcription termination factor family protein (.1) Lus10028912 [exp] 129 / 1e-33 AT5G64950 249 / 1e-79 Mitochondrial transcription termination factor family protein (.1) Lus10016551 [exp] 115 / 2e-29 AT5G07900 144 / 3e-40 Mitochondrial transcription termination factor family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G034700 [exp] 186 / 4e-55 AT5G07900 202 / 2e-61 Mitochondrial transcription termination factor family protein (.1) Potri.001G030300 [exp] 176 / 2e-51 AT5G07900 190 / 2e-56 Mitochondrial transcription termination factor family protein (.1) Potri.001G034933 [exp] 174 / 7e-51 AT5G07900 194 / 3e-58 Mitochondrial transcription termination factor family protein (.1) Potri.001G034500 [exp] 171 / 1e-49 AT5G07900 208 / 2e-63 Mitochondrial transcription termination factor family protein (.1) Potri.001G035200 [exp] 170 / 2e-49 AT5G07900 168 / 3e-48 Mitochondrial transcription termination factor family protein (.1) Potri.001G034600 [exp] 168 / 2e-48 AT5G07900 197 / 4e-59 Mitochondrial transcription termination factor family protein (.1) Potri.003G189300 [exp] 168 / 2e-48 AT5G07900 178 / 6e-52 Mitochondrial transcription termination factor family protein (.1) Potri.003G190300 [exp] 164 / 7e-47 AT5G07900 209 / 8e-64 Mitochondrial transcription termination factor family protein (.1) Potri.001G035000 [exp] 161 / 1e-45 AT5G07900 209 / 7e-64 Mitochondrial transcription termination factor family protein (.1) Potri.003G190700 [exp] 159 / 3e-45 AT5G07900 213 / 3e-65 Mitochondrial transcription termination factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02536 [flax] [poplar] mTERF mTERF
Representative CDS sequence Show only first row Show all	>Lus10036450 pacid=23174385 polypeptide=Lus10036450 locus=Lus10036450.g ID=Lus10036450.BGIv1.0 annot-version=v1.0 ATGGCTCTTTCAATCCGCAAGTCTCTCTTATCATTATATCTAAGGTCGCCGTCCTTTACCGACACTAGCTCATTCTTCTTCTCAACCCTCAAAACCACAA AATCCAAATCCAAATCCAAATACAAATCCAAAATCTCAGTCTTTGATTACTTAGTCAACCAGCAGCAGTTCTCTCCTGACAGAGCCGCCAAAGCCTTATC AGTCGCAGTCGTCAAGAACCTGAAGAACCCTCAAAACGCCGATTCCGTACTATCATACCTAACCGCCGTCGGATTCTCCCGCTCCCAGATCGAAACCGTC GTCCAAAAGGTCCCTCGAGTCCTCTCCTCCGACATCGACAACGTTCTAAAACCTAAAGTCGAAGTCTTCTCCGATTCAGGATTCAAACCAAAAGACATGA CGGAGATCATCACCGGAGATCCATGGATCCTAACCAGAAGCTCAGTCAACAGCTTAGCTCCTTCAGTAGAAGTATTAAAGAGCGTAGTCGGATCAGTCTC CGATGTAGCCGCATTGTTGAAGAAATCCGCTTGGTTCTTAAAACAGGATCTGAAAGCAACATTTCTCCCCAACGTCGAATACGCCCAATCATTAGGACTT ACTCACGAGAAGATACTCCGATTCGTGTCGAACTTCCCTCGATTCTTCCTCCTCAAGCCCGAGCTAGTCAAGGAATTTGCTCGAAAGGTCGAAGAGATGG GACTCGACAAGGAATCCACGATGTTTTTATACGCTGTTCGTGTTGTGGGCTCGATGAGTCCCAAAAGATGGGAGGACAAGCTGAATCTGCTACGAGAGCT CGGATTCTCCGAGGAAGATATTGTGTTTGCGTTCAAGAGGCATCCGATGGCCTTCTCGACATCAGATAGGAAGGTGAAGGAAGTGGTGGAGTTCTTGGTG AGCGAGACTGATCTCGACATACAGAGCATTGTGAAGTCTCCGCAGTTGCTGCTGTTTAGTATCGAGAATCGGATTAAGCCGAGGCTGATGGTTATAAAGG CTTTGCAGGAGAAGAACCTGGTACCAGCGATTAATATGTTGAATGTTTACAAGATGGGACATATTCCGTTCTCGAAGAGGTATGTGTTTCCGTACTTGGA GAAGGTTGATGGCTTGTTAAGGCTAGCTGCTGGGGAATAG
AA sequence Show only first row Show all	>Lus10036450 pacid=23174385 polypeptide=Lus10036450 locus=Lus10036450.g ID=Lus10036450.BGIv1.0 annot-version=v1.0 MALSIRKSLLSLYLRSPSFTDTSSFFFSTLKTTKSKSKSKYKSKISVFDYLVNQQQFSPDRAAKALSVAVVKNLKNPQNADSVLSYLTAVGFSRSQIETV VQKVPRVLSSDIDNVLKPKVEVFSDSGFKPKDMTEIITGDPWILTRSSVNSLAPSVEVLKSVVGSVSDVAALLKKSAWFLKQDLKATFLPNVEYAQSLGL THEKILRFVSNFPRFFLLKPELVKEFARKVEEMGLDKESTMFLYAVRVVGSMSPKRWEDKLNLLRELGFSEEDIVFAFKRHPMAFSTSDRKVKEVVEFLV SETDLDIQSIVKSPQLLLFSIENRIKPRLMVIKALQEKNLVPAINMLNVYKMGHIPFSKRYVFPYLEKVDGLLRLAAGE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G07900			Mitochondrial transcription te...		Lus10036450 [exp]	0	1
AT5G03070		IMPA-9	importin alpha isoform 9 (.1)		Lus10008480 [exp]	8.0	0.8702
AT1G09760		U2A'	U2 small nuclear ribonucleopro...		Lus10028659 [exp]	8.8	0.8961
AT1G06220		GFA1, CLO, MEE5	MATERNAL EFFECT EMBRYO ARREST ...		Lus10043478 [exp]	10.4	0.8944
AT4G10710		SPT16	global transcription factor C ...		Lus10039410 [exp]	13.9	0.8890
AT1G61580		RPL3B, ARP2	ARABIDOPSIS RIBOSOMAL PROTEIN ...		Lus10037360 [exp]	22.3	0.8929
AT4G00100		PFL2, ATRPS13A	POINTED FIRST LEAF 2, ribosoma...		Lus10038908 [exp]	28.0	0.8913
AT4G01560		MEE49	maternal effect embryo arrest ...		Lus10030171 [exp]	29.0	0.8884
AT1G77720		PPK1	putative protein kinase 1 (.1)		Lus10025634 [exp]	30.0	0.8859
AT5G11300		CYC2BAT, CYCA2;...	CYCLIN A2;2, mitotic-like cycl...		Lus10008103 [exp]	31.5	0.8860
AT2G31610			Ribosomal protein S3 family pr...		Lus10012857 [exp]	32.3	0.8918

Compare expression of checked genes

Lus10036450 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.