Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G78100 244 / 2e-79 AUF1 auxin up-regulated f-box protein 1, F-box family protein (.1) AT1G22220 230 / 4e-74 AUF2 auxin up-regulated f-box protein 2, F-box family protein (.1) AT4G18380 180 / 7e-54 F-box family protein (.1.2) AT1G30200 158 / 3e-45 F-box family protein (.1.2) AT5G46170 141 / 6e-39 F-box family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041123 [exp] 550 / 0 AT1G78100 250 / 2e-81 auxin up-regulated f-box protein 1, F-box family protein (.1) Lus10023298 [exp] 157 / 2e-44 AT5G46170 505 / 4e-179 F-box family protein (.1) Lus10038511 [exp] 130 / 8e-36 AT5G46170 453 / 5e-161 F-box family protein (.1) Lus10013431 [exp] 64 / 1e-11 AT4G18380 102 / 4e-25 F-box family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G094600 [exp] 281 / 1e-93 AT1G78100 292 / 9e-98 auxin up-regulated f-box protein 1, F-box family protein (.1) Potri.005G166500 [exp] 277 / 2e-92 AT1G22220 295 / 1e-99 auxin up-regulated f-box protein 2, F-box family protein (.1) Potri.004G065900 [exp] 169 / 2e-49 AT5G46170 499 / 3e-177 F-box family protein (.1) Potri.011G082900 [exp] 166 / 3e-48 AT5G46170 488 / 9e-173 F-box family protein (.1) Potri.009G047600 [exp] 113 / 6e-29 AT4G18380 197 / 4e-60 F-box family protein (.1.2) Potri.003G203500 [exp] 47 / 6e-06 AT4G18380 49 / 2e-06 F-box family protein (.1.2) Potri.001G022400 [exp] 44 / 6e-05 ND / Potri.003G203000 [exp] 44 / 7e-05 AT1G22220 52 / 2e-07 auxin up-regulated f-box protein 2, F-box family protein (.1) Potri.001G021900 [exp] 44 / 0.0001 AT1G22220 45 / 4e-05 auxin up-regulated f-box protein 2, F-box family protein (.1) Potri.001G022100 [exp] 44 / 0.0001 AT1G22220 45 / 4e-05 auxin up-regulated f-box protein 2, F-box family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10036451 pacid=23174694 polypeptide=Lus10036451 locus=Lus10036451.g ID=Lus10036451.BGIv1.0 annot-version=v1.0 ATGGAAGCTGATGATGACTATTTCGATCATCTCCCAGACTCAATCGTCCTAACGATCTTCAACAGCATCGCCGACGTCAAGACCCTCATCCGCTGCCGGT CAGTTTCACAGCGGTTCAACTCATTGGTACCTGAAACAGAGTCGCTCTGCCTCCGGGTCGACCGGGTCATATCGTCGAGCTCCACCGCCGGAGGCGACGA CGACAGCGATGAAGAAGACCCGTTCTTCGCCTTCTTCAAGTCAGTTGTGGAATCCATCCAGACGCTGTTCAACACGGGACCACCGGACGTGTTTGATCAA GGGTTCTGTTCGCCGGCGGAGATTCTCTCCGGGTTTGACCGGATCTGCCGGCTGGAAATCGAGCTTCCCAATGGTGATATGCGGCTCGAGAAGGGAGTGC TGGTTAGATGGAGAGCCGAGTTCGGGAAGACGTTACGGAGCTGCGTGATCATCGGGTTCCGGTCGGGCGGCGGGAGCAATTTGGGTTTGGCAGAGGGGGT GAAGACGGCGGTTGTTTGGACGGTGAGCGCTTTGATGGCGGCGTCGTCGAGGCACTGCTTGGCCGGAGACGTGGTAGTTAGGCCGGGGGATCAGGGGATG GAGCGGATGGTGCTCAAGGATGCTGACGGAGAAGGGACTCTGCTGATGGAGAAAGACGGGGTGGCGGAGATGGCGGAGTTCTTCGCCGGCGGTGGGTCTG ATCTGAGGAGGACGGTGGTTCCGGCGGTAAGGATGAGGATGAGGTACGAAGGTCAACTGGTGATGAAGAATGGAAGGTCGGTAAAGAGTGCCATGCTGGC GGTTGTGCGGCCGTTTTCTTCTCCGGTAAGTAATGACGTGGAGGATGCTGAGCTGGCAATGGCTGCGTTCGGCTGTGGGGCCTACAGGGATGTTGTCGTG GCGCTTCTCAAGAGGAGGAGCTTTGGCCTTGAGATGAACCCGTTTTAA
AA sequence Show only first row Show all	>Lus10036451 pacid=23174694 polypeptide=Lus10036451 locus=Lus10036451.g ID=Lus10036451.BGIv1.0 annot-version=v1.0 MEADDDYFDHLPDSIVLTIFNSIADVKTLIRCRSVSQRFNSLVPETESLCLRVDRVISSSSTAGGDDDSDEEDPFFAFFKSVVESIQTLFNTGPPDVFDQ GFCSPAEILSGFDRICRLEIELPNGDMRLEKGVLVRWRAEFGKTLRSCVIIGFRSGGGSNLGLAEGVKTAVVWTVSALMAASSRHCLAGDVVVRPGDQGM ERMVLKDADGEGTLLMEKDGVAEMAEFFAGGGSDLRRTVVPAVRMRMRYEGQLVMKNGRSVKSAMLAVVRPFSSPVSNDVEDAELAMAAFGCGAYRDVVV ALLKRRSFGLEMNPF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G78100		AUF1	auxin up-regulated f-box prote...		Lus10036451 [exp]	0	1
AT1G10740			alpha/beta-Hydrolases superfam...		Lus10029114 [exp]	6.3	0.7951
AT3G51520			diacylglycerol acyltransferase...		Lus10013796 [exp]	12.5	0.8028
AT1G49050			Eukaryotic aspartyl protease f...		Lus10042982 [exp]	15.1	0.8154
AT2G03270			DNA-binding protein, putative ...		Lus10042360 [exp]	22.7	0.7998
AT3G57870		SCE1A, SCE1, AH...	SUMO CONJUGATING ENZYME 1A, EM...		Lus10009377 [exp]	45.5	0.7819
AT5G08790	NAC	ATAF2, ANAC081	Arabidopsis NAC domain contain...		Lus10033493 [exp]	48.0	0.7705
AT1G01720	NAC	ATAF1, ANAC002	Arabidopsis NAC domain contain...		Lus10042731 [exp]	49.9	0.7306
AT1G67810		SUFE2	sulfur E2 (.1)		Lus10006468 [exp]	53.4	0.7790
AT4G27250			NAD(P)-binding Rossmann-fold s...		Lus10016968 [exp]	54.5	0.7550
AT2G19130			S-locus lectin protein kinase ...		Lus10039762 [exp]	66.3	0.7394

Compare expression of checked genes

Lus10036451 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.