Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G16143 802 / 0 IMPA-2 importin alpha isoform 2 (.1.2) AT3G06720 800 / 0 IMPA1, IMPA-1, AIMPALPHA, ATKAPALPHA, AT-IMP importin alpha isoform 1 (.1.2) AT1G09270 728 / 0 IMPA-4 importin alpha isoform 4 (.1.2.3) AT1G02690 699 / 0 IMPA-6 importin alpha isoform 6 (.1.2) AT4G02150 688 / 0 IMPA-3, MOS6, ATIMPALPHA3 MODIFIER OF SNC1, 6, IMPORTIN ALPHA ISOFORM 3, IMPORTIN ALPHA 3, ARM repeat superfamily protein (.1) AT5G49310 588 / 0 IMPA-5 importin alpha isoform 5 (.1) AT3G05720 566 / 0 IMPA-7 importin alpha isoform 7 (.1) AT5G52000 406 / 2e-138 IMPA-8 importin alpha isoform 8 (.1) AT1G32880 180 / 3e-54 ARM repeat superfamily protein (.1) AT5G03070 172 / 1e-47 IMPA-9 importin alpha isoform 9 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037722 [exp] 868 / 0 AT3G06720 884 / 0.0 importin alpha isoform 1 (.1.2) Lus10041124 [exp] 857 / 0 AT4G16143 733 / 0.0 importin alpha isoform 2 (.1.2) Lus10016850 [exp] 856 / 0 AT4G16143 858 / 0.0 importin alpha isoform 2 (.1.2) Lus10031398 [exp] 854 / 0 AT3G06720 925 / 0.0 importin alpha isoform 1 (.1.2) Lus10010933 [exp] 841 / 0 AT3G06720 922 / 0.0 importin alpha isoform 1 (.1.2) Lus10010028 [exp] 781 / 0 AT3G06720 862 / 0.0 importin alpha isoform 1 (.1.2) Lus10036330 [exp] 778 / 0 AT3G06720 874 / 0.0 importin alpha isoform 1 (.1.2) Lus10001480 [exp] 192 / 4e-55 AT5G03070 729 / 0.0 importin alpha isoform 9 (.1) Lus10008480 [exp] 190 / 4e-54 AT5G03070 738 / 0.0 importin alpha isoform 9 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G214100 [exp] 853 / 0 AT4G16143 881 / 0.0 importin alpha isoform 2 (.1.2) Potri.010G001400 [exp] 851 / 0 AT4G16143 849 / 0.0 importin alpha isoform 2 (.1.2) Potri.013G010900 [exp] 837 / 0 AT3G06720 869 / 0.0 importin alpha isoform 1 (.1.2) Potri.005G020400 [exp] 836 / 0 AT3G06720 880 / 0.0 importin alpha isoform 1 (.1.2) Potri.014G124200 [exp] 768 / 0 AT3G06720 868 / 0.0 importin alpha isoform 1 (.1.2) Potri.002G199600 [exp] 761 / 0 AT3G06720 858 / 0.0 importin alpha isoform 1 (.1.2) Potri.013G007300 [exp] 755 / 0 AT1G09270 877 / 0.0 importin alpha isoform 4 (.1.2.3) Potri.016G086600 [exp] 176 / 7e-49 AT5G03070 801 / 0.0 importin alpha isoform 9 (.1) Potri.002G052700 [exp] 67 / 2e-11 AT5G19330 994 / 0.0 ARM repeat protein interacting with ABF2 (.1.2) Potri.005G210000 [exp] 66 / 3e-11 AT5G19330 977 / 0.0 ARM repeat protein interacting with ABF2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF00514 [flax] [poplar] Arm Armadillo/beta-catenin-like repeat CL0020 [flax] [poplar] TPR PF01749 [flax] [poplar] IBB Importin beta binding domain
Representative CDS sequence Show only first row Show all	>Lus10036452 pacid=23174606 polypeptide=Lus10036452 locus=Lus10036452.g ID=Lus10036452.BGIv1.0 annot-version=v1.0 ATGGTGGAGATCCGGAAGAACAAGCGCGAGGAAGGCTTGATGAAGAAGCGGCGGGAAGGACTTCAGGCGCAGCAGCTTCCTGGAGCTACTCTTCCCGCTA CTATGGAGAAGAAGTTGGAGAGCTTGCCTTCGCTGGTAGCTGGTGTCTGGTCAGAGGATGGTAATCTACAGCTCGATGCCACCACTCAGTTCAGGAAGCT GCTTTCTATCGAGAGAAGTCCTCCAATCGAGGAGGTGATTCAGTCTGGTGTTGTTCCTCGCTTTGTAGAGTTCCTTGTTCGCGAGGATTTCCCTCAGCTT CAGGCATCTGCTTGGGCGCTCACAAATATTGCTTCCGGTACCTCTGAGAATACCAGAGTGGTGATTGATCATAATGCTGTTCCGATATTCGTTAAGCTTC TAGGTTCTTCTACAGATGATGTTCGCGAGCAGGCTGTGTGGGCTTTGGGAAATGTTGCTGGTGATTCCCCAAAATGCCGCGATCTTGTTCTGGGTCATGG AGCATTGATTCCACTTCTGGCTCAGTTGAATGAACATGCTAAGCTATCAATGCTGAGGAATGCCACTTGGACGTTGTCGAACTTCTGCAGGGGAAAGCCT CAGCCTCCTTTTGAGCAGGTGAGGCCAGCTCTTCCTGCACTTGAACGTCTTGTTCACTCATCCGATGAGGAAGTCCTTACCGATGCATGTTGGGCGTTAT CTTATCTCTCTGATGGCACAAATGATAAAATTCAAGCTGTGATTGATGCTGGTGTTTGCCAACGACTTGTTGAACTTCTCCTCCATCAGTCTCCATCAGT GCTTGTTCCAGCCCTTCGCACTATCGGAAACATTGTGACAGGGGATGATATGCAAACTGAGTTCGTAATCAACAATGGTGCACTTCCGTGCCTTCTCAAC CTGTTGAATCAAAATATGAAAAAGAGCATTAAGAAAGAAGCGTGCTGGACCATCTCAAACATTACAGCTGGAAACAAGGATCAGATTCAGGCTGTGATTG CTGCTGGTCTGGTTGCTCCCCTGGTCAACTTGCTTCAAAATGCCGAGTTCGATATTAAGAAAGAGGCTGCTTGGGCGATCTCTAATGCTACTTCCGGTGG TACCCATGATCAAATCAAGTATCTAGTGAGCCAGGGATGTATAAAACCATTGTGCGATCTCCTTGTATGTCCCGACCCAAGAATCGTTACGGTCTGTCTC GAAGGACTAGAGAACATCTTGAAGGTTGGTGAAGCCGAAACGACTATGGGGGCCAGTGAAGTTAATTTGTTTTCCCAGATGATAGATGATGCTGAGGGAC TCGAAAAGATAGAAAATCTCCAGAGTCACGATAACAATGAGATCTATGAGAAGGCAGTTAAGATTCTGGAAACATATTGGTTGGAGGAAGAGGATGAGAC TTTACCTCCTAGTGAAGGTAACCAGCAAGGCTTCCAGTTTGGTACTGGAAATAACGTCTCTGTTCCATCTGGTGGCTTCAACTTTAGTTAA
AA sequence Show only first row Show all	>Lus10036452 pacid=23174606 polypeptide=Lus10036452 locus=Lus10036452.g ID=Lus10036452.BGIv1.0 annot-version=v1.0 MVEIRKNKREEGLMKKRREGLQAQQLPGATLPATMEKKLESLPSLVAGVWSEDGNLQLDATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLVREDFPQL QASAWALTNIASGTSENTRVVIDHNAVPIFVKLLGSSTDDVREQAVWALGNVAGDSPKCRDLVLGHGALIPLLAQLNEHAKLSMLRNATWTLSNFCRGKP QPPFEQVRPALPALERLVHSSDEEVLTDACWALSYLSDGTNDKIQAVIDAGVCQRLVELLLHQSPSVLVPALRTIGNIVTGDDMQTEFVINNGALPCLLN LLNQNMKKSIKKEACWTISNITAGNKDQIQAVIAAGLVAPLVNLLQNAEFDIKKEAAWAISNATSGGTHDQIKYLVSQGCIKPLCDLLVCPDPRIVTVCL EGLENILKVGEAETTMGASEVNLFSQMIDDAEGLEKIENLQSHDNNEIYEKAVKILETYWLEEEDETLPPSEGNQQGFQFGTGNNVSVPSGGFNFS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G16143		IMPA-2	importin alpha isoform 2 (.1.2...		Lus10036452 [exp]	0	1
AT1G78300		14-3-3OMEGA, GF...	14-3-3 PROTEIN G-BOX FACTOR14 ...		Lus10020940 [exp]	1.4	0.8266
AT1G78300		14-3-3OMEGA, GF...	14-3-3 PROTEIN G-BOX FACTOR14 ...		Lus10008715 [exp]	3.0	0.7931
AT4G16143		IMPA-2	importin alpha isoform 2 (.1.2...		Lus10041124 [exp]	3.5	0.8197
AT5G65670	AUX_IAA	IAA9	indole-3-acetic acid inducible...		Lus10011583 [exp]	4.5	0.7826
AT3G18060			transducin family protein / WD...		Lus10027252 [exp]	6.9	0.7883
AT2G23070			Protein kinase superfamily pro...		Lus10011526 [exp]	10.5	0.7143
AT3G44200		IBO1, ATNEK6	"NIMA \(never in mitosis, gene...		Lus10013338 [exp]	11.5	0.7435
AT4G34660			SH3 domain-containing protein ...		Lus10017501 [exp]	12.0	0.7298
AT2G01570	GRAS	RGA1	REPRESSOR OF GA1-3 1, REPRESSO...		Lus10017626 [exp]	17.0	0.6829
AT1G53290			Galactosyltransferase family p...		Lus10013683 [exp]	21.4	0.7260

Compare expression of checked genes

Lus10036452 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.