Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G16144 629 / 0 AMSH3 associated molecule with the SH3 domain of STAM 3 (.1) AT1G48790 414 / 4e-140 AMSH1 associated molecule with the SH3 domain of STAM 1 (.1) AT1G10600 255 / 2e-82 AMSH2 associated molecule with the SH3 domain of STAM 2 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009006 [exp] 412 / 8e-139 AT1G48790 589 / 0.0 associated molecule with the SH3 domain of STAM 1 (.1) Lus10009634 [exp] 343 / 8e-112 AT1G48790 536 / 0.0 associated molecule with the SH3 domain of STAM 1 (.1) Lus10030875 [exp] 246 / 2e-78 AT1G10600 311 / 2e-108 associated molecule with the SH3 domain of STAM 2 (.1.2.3) Lus10030613 [exp] 206 / 6e-63 AT1G10600 253 / 5e-85 associated molecule with the SH3 domain of STAM 2 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G141100 [exp] 695 / 0 AT4G16144 697 / 0.0 associated molecule with the SH3 domain of STAM 3 (.1) Potri.015G045800 [exp] 410 / 2e-138 AT1G48790 581 / 0.0 associated molecule with the SH3 domain of STAM 1 (.1) Potri.010G041200 [exp] 208 / 2e-64 AT1G10600 256 / 3e-87 associated molecule with the SH3 domain of STAM 2 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0366 [flax] [poplar] JAB PF01398 [flax] [poplar] JAB JAB1/Mov34/MPN/PAD-1 ubiquitin protease
Representative CDS sequence Show only first row Show all	>Lus10036454 pacid=23174451 polypeptide=Lus10036454 locus=Lus10036454.g ID=Lus10036454.BGIv1.0 annot-version=v1.0 ATGAAGATCGACCTGAATAAAACGGCTCGGAAAGTCGAGGTGGATAATCGGATTCCTCTCCGGTACTACTACAGGATCGCCGATAACCTTCTTAGACAGG CGAGCGTTTACCGGGAGGAGCGTAATGTGGTGGATTTGTATATCATGCTTCTCAGTTTAGTCTCTGAAACGATTCCATTCCATCGGGATTATCAAGGTTT TCATCTGAAGGAAAAAGCTAGCTATAGAAAGAGGTTGCTTTCTGTATTGGAGGAACTTGAATCTTTGAAACCTGAATTCAATCGCTGTGTGGAGGAACTG AACAGAGATTATTCTAGTGTTCAAATACGTGAACTTGGTGGTGGGGAAGAAGTTATATATGGTTCAGGGTCGTCATATCCACAGAGTAGATCAATGACTG GAAATGCTTACCCTGAAAGAAGTAATATACAGCCTAGGAGCACGGTTCCTCAATCTTCATGGAGAAACAATGATGCTCCAACTCTTTACTCGACTTCCTC AGCACTTGAAAAGCAATTGCATAAGTTATCAATCGGCCGTCCTGTTCCAAATCAGGAGACTTTGTCTAGGCACTCGCTCTTAGGACCGAACGGGCTTCGT GCTGAATGGCGGTCTCCTACTGCAGAGATAAAAGTGCAATATCCTAGCCATTCTGAGTTAGCTTCTACACAAGATGCAAGCTTAGAACAGGTTGGGGGAT TTGAAGGTATAGCAACAAAGAACAACGTATCTGAAGGGCTTGGTGGTGTCATGGATTCTGTCCTTTCCTTGGATGATGGAAAATGGATACATCCTATTGA GGAACCAGCCAACACATTAGTTCGTGAGGCAAGGGAGGATCCGTTTCAGTTTGTTGGTATTAGGCAACCATCCCCTCCACCAGTTCTTGCTCAAGTTCAA CATGAATATGCTCACATCCCGCCATCTAAAGTTGCTGATCCAAGACCTGGTCCAGCACCTTGCCAAGATGGCATTTCCGACTCCAATTCCTTTCAAGACG TGCATGTTCCTGTAAATATGATGGATGACTTCCTAAGATTGGCCCGGGCAAATACAGAGAAAAATCTAGAAACATGCGGTGTTTTAGCTGGTGCTCTGAA AAACAGGGTGTTCCACATCAGCATGCTTATAATCCCAAAGCAAGAGTCAACTTCAGATTCGTGTCAGACGTTAAATGAAGAAGAAATATTTGAAGTTCAA GACAAGCTCTCGTTGTTTCCTCTTGGATGGATCCATGTAATCCAATTCGCCATGCTTAGCTTTTCCCTTGTTGAATTTCAGACTCATCCAACACAAACCT GTTTCATGTCATCGGTTGATCTGCACACTCATTACTCCTACCAGATCATGTTACCTGAAGCAATCGCTATCGTCATGGCCCCAACTGATGATTCAAGTCC ACACGGCATATTCCATCTGTCGGACCCGGGCGGTGTATCTGTGATCCGCAACTGCCAGCAAAGGGGATTCCATCCACACGAAGAGCCCGTGGATGGAAAC CCAATCTACGAGCATTGCTCCCATGTCTACCTGAATGCCAAGATGAAGTTTGAGGTTGTCGATCTTCGGTGA
AA sequence Show only first row Show all	>Lus10036454 pacid=23174451 polypeptide=Lus10036454 locus=Lus10036454.g ID=Lus10036454.BGIv1.0 annot-version=v1.0 MKIDLNKTARKVEVDNRIPLRYYYRIADNLLRQASVYREERNVVDLYIMLLSLVSETIPFHRDYQGFHLKEKASYRKRLLSVLEELESLKPEFNRCVEEL NRDYSSVQIRELGGGEEVIYGSGSSYPQSRSMTGNAYPERSNIQPRSTVPQSSWRNNDAPTLYSTSSALEKQLHKLSIGRPVPNQETLSRHSLLGPNGLR AEWRSPTAEIKVQYPSHSELASTQDASLEQVGGFEGIATKNNVSEGLGGVMDSVLSLDDGKWIHPIEEPANTLVREAREDPFQFVGIRQPSPPPVLAQVQ HEYAHIPPSKVADPRPGPAPCQDGISDSNSFQDVHVPVNMMDDFLRLARANTEKNLETCGVLAGALKNRVFHISMLIIPKQESTSDSCQTLNEEEIFEVQ DKLSLFPLGWIHVIQFAMLSFSLVEFQTHPTQTCFMSSVDLHTHYSYQIMLPEAIAIVMAPTDDSSPHGIFHLSDPGGVSVIRNCQQRGFHPHEEPVDGN PIYEHCSHVYLNAKMKFEVVDLR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G16144		AMSH3	associated molecule with the S...		Lus10036454 [exp]	0	1
AT1G22620		ATSAC1	suppressor of actin 1, Phospho...		Lus10014827 [exp]	4.1	0.9285
AT4G17570	GATA	GATA26	GATA transcription factor 26 (...		Lus10000587 [exp]	5.2	0.8855
AT2G31260		ATAPG9, APG9	autophagy 9 (APG9) (.1)		Lus10003567 [exp]	9.2	0.9103
AT3G11440	MYB	AtMYB65	myb domain protein 65 (.1)		Lus10026142 [exp]	10.6	0.8992
AT5G51070		SAG15, CLPD, ER...	SENESCENCE ASSOCIATED GENE 15,...		Lus10043013 [exp]	15.5	0.8909
AT3G22260			Cysteine proteinases superfami...		Lus10010459 [exp]	16.4	0.8725
AT5G54730		ATATG18F	ARABIDOPSIS THALIANA HOMOLOG O...		Lus10035835 [exp]	19.4	0.8948
AT4G12610		RAP74, ATRAP74	transcription activators;DNA b...		Lus10008686 [exp]	21.8	0.9028
AT1G12360		KEU	keule, Sec1/munc18-like (SM) p...		Lus10032196 [exp]	26.2	0.8774
AT3G15355		UBC25 ,PFU1	PHO2 FAMILY UBIQUITIN CONJUGAT...		Lus10039831 [exp]	26.8	0.8425

Compare expression of checked genes

Lus10036454 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.