Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G16940 754 / 0 CAMTA calmodulin binding;transcription regulators (.1) AT4G16150 744 / 0 CAMTA calmodulin binding;transcription regulators (.1) AT2G22300 218 / 1e-58 CAMTA SR1, CAMTA3 CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 3, signal responsive 1 (.1.2) AT1G67310 211 / 2e-56 CAMTA Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains (.1) AT5G64220 191 / 1e-49 CAMTA Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains (.1.2) AT5G09410 183 / 3e-47 CAMTA CAMTA1, EICBP.B calmodulin-binding transcription activator 1, ethylene induced calmodulin binding protein (.1.2.3) AT2G14255 49 / 1e-05 Ankyrin repeat family protein with DHHC zinc finger domain (.1) AT5G14230 45 / 0.0002 unknown protein AT4G35450 43 / 0.0007 AKR2A, AFT, AKR2 ankyrin repeat-containing protein 2 (.1.2.3.4.5)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037738 [exp] 1069 / 0 AT4G16150 1033 / 0.0 calmodulin binding;transcription regulators (.1) Lus10016873 [exp] 1032 / 0 AT3G16940 929 / 0.0 calmodulin binding;transcription regulators (.1) Lus10041126 [exp] 887 / 0 AT4G16150 430 / 1e-137 calmodulin binding;transcription regulators (.1) Lus10041704 [exp] 349 / 9e-105 AT2G22300 912 / 0.0 CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 3, signal responsive 1 (.1.2) Lus10024044 [exp] 232 / 2e-63 AT2G22300 822 / 0.0 CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 3, signal responsive 1 (.1.2) Lus10003119 [exp] 225 / 4e-61 AT1G67310 640 / 0.0 Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains (.1) Lus10011352 [exp] 226 / 8e-61 AT1G67310 637 / 0.0 Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains (.1) Lus10003405 [exp] 219 / 1e-58 AT5G64220 1028 / 0.0 Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains (.1.2) Lus10036162 [exp] 216 / 2e-57 AT5G64220 818 / 0.0 Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G141700 [exp] 931 / 0 AT4G16150 1038 / 0.0 calmodulin binding;transcription regulators (.1) Potri.008G107900 [exp] 901 / 0 AT4G16150 1026 / 0.0 calmodulin binding;transcription regulators (.1) Potri.001G057800 [exp] 236 / 1e-64 AT1G67310 832 / 0.0 Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains (.1) Potri.005G075100 [exp] 234 / 2e-63 AT2G22300 976 / 0.0 CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 3, signal responsive 1 (.1.2) Potri.007G093400 [exp] 233 / 3e-63 AT2G22300 991 / 0.0 CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 3, signal responsive 1 (.1.2) Potri.010G153100 [exp] 221 / 1e-59 AT5G64220 676 / 0.0 Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains (.1.2) Potri.003G170600 [exp] 214 / 2e-57 AT1G67310 856 / 0.0 Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains (.1) Potri.008G099733 [exp] 59 / 8e-11 AT5G64220 97 / 1e-25 Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains (.1.2) Potri.001G287000 [exp] 57 / 4e-08 AT2G14255 671 / 0.0 Ankyrin repeat family protein with DHHC zinc finger domain (.1) Potri.004G210000 [exp] 54 / 4e-07 AT2G17390 418 / 1e-146 ankyrin repeat-containing 2B (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0220 [flax] [poplar] EF_hand PF00612 [flax] [poplar] IQ IQ calmodulin-binding motif CL0465 [flax] [poplar] Ank PF00023 [flax] [poplar] Ank Ankyrin repeat CL0465 [flax] [poplar] PF03859 [flax] [poplar] CG-1 CG-1 domain
Representative CDS sequence Show only first row Show all	>Lus10036455 pacid=23174422 polypeptide=Lus10036455 locus=Lus10036455.g ID=Lus10036455.BGIv1.0 annot-version=v1.0 ATGGCTTTAGCCACTATTTGGGCTGGATCGCTGCGCTTACTGCTACTCATGTTATTGCTGCTCCGAGATGATGAGCTTCCAGAACTTCCGTTACCTCCAG CGACGCCGCTGGCCTTACCTGCCATATATCATCACTTGAAAAGTTCGGTGGTGTATTGCGATTTGGATGCTGGGAAGGTGTTGGAGGAAGCGAAATCACG ATGGCTTCGTCCAAACGAGATTCATGCGATCTTGTGTAATCCAAAATACTTCACCGTCTTCGTCAAGCCTGTGAACTTACCTAAGAGTGGCACCATTGTA TTGTTTGACCGTAAGATGCTTAGGAACTTCAGGAAGGATGGTTATAGATGGAAGAAGAAAAGGGATGGAAAGACTGTTAAAGAAGCTCATGAGCATTTAA AAGTTGGTACTGAAGAAAGGATTCATGTATACTATGCACATGGTGAAGATAATCAGACGTTTGTACGCCGATGTTATTGGCTGCTTGATAAGTATGTATC TTTAACATTGCAGAGTCCTTCTGTCACGCCTCTGAATTCAAACTCGAGCTCAGTTTCAAACCCGTCTACACCCTGGCTTTCAGCTGAACAATTTGATTCT GGAGACGGTCATGCATATTCTATAGCCGAGAAAGATCTTACAGATCCTGGGAGTTTGACTGTCAACCATCATCAATTGAGGATTCACGATATCAACACGC TTGAATGGGATGACCTGGTGTCTAGTGATCCTAATAATCTGATAACCTTTGGAGATAATAGCTCCTACCTTAACAAGCAGAACCAGGTTGCTCTGAATGG GGCTGCTAGTTACCACAATGCTTCCCTTCCTGCCTCTAACATATCTGAGGGCAATAGCCCTATAAACCAAGCAATTGGCCCTTATGTGAACAGTGGTACC ACTTTCTACAGTGCCCCAGCTGGTACCTATAGTCAGATATCTAATCTCCAGCTAAATTCAAACACGCAAAGTATACACTATCAGACTATGGGCCTTGATT CTTCACTGGACAACTTAATTACTGATGGTTTGCAAAGTGAGGAAAGTTCTACAAAGTGGAACAATGATGCAATGGCCACATCTAAGGCCTCTGTAGAAGA TCATTTGTTTGAACCTTCTATCTCACCCGGTGACGGGTCATCTGCTTCTCCAGCAATTGGTCCTGGTCAATATTCTGTAGAAGGGTACTCGTTTGTCATA ACCGATGTCTCACATGCATGGGCCTTTTCATCTGAGACAACAAAGTCTCTGCATCTGGCAAACTCCACTCTGCTCTGTGTTTGTGGTGACGATTGCATTT CTACTGAAGTCGTCCAATCTGGAGTATATCGCTGTTACTTACCTCCACATTCCCCTGGATTAGTTAACCTTTGTCTCAGTTTGGATGGCTGTAAACCACT CAGCCAAATTGTGAGTTTCGAGTACCGCGAGTCTGCACATAATGGTGATGATGTGGTTTCAAAAGACGAAAGCTCCACGTGGGAACGATTTCATCTCCAA ACACGGCTTGCTTATTTGCTTCTATCTACTTCCAAGACCCTCAACCTGCTACGTAGTAAGGTGTCCCCAAGTAACCTGAAGGAGGCTGATAAGTTCGCCA TCAGAACCACCAACATTACCCGTAGCTGGTCATATTTGTTTGCGTTGATTGACGAGAACAGAATTTCACTGACACAAGCCAAAGAAGACGTGTATGAAAT TACTTTGAAGAGCATATTGCAGGAGTGGCTCTTGGAAAGAGTCGTTGAAGGCTGTAGTAAATCCTCGGAATACGATGCTGAAGGTCAAGGAGTTATCCAC TTGTGTGCTAGACTTGGATATACTTGGGCTATTTATTTATATTCATGGTCAGGTTTATCTCTAGATTTCCGTGACAAACATGGATGGACTGCACTTCACT GGGCTGCATATTACGGAAGGGAGAAAATGGTGGCAGGTCTATTATCGGCAGGGACAAAACCGAACTTGGTTACCGACCCAACTGCGGAAAACCCCGGTGG ACTTACTCCCGCCGATGTTGCAACTCAGACAGGGCACGAAGGCTTGGCAGCTTATCTATCCGAAAAAGCTCTAGTATCACATTTCAACGATATGTCCATA GCGGGAAACGTCTGCGGTGCATTACAACCCACCGAACCCATAATTGGTGCTGAAAACCTGAGCGAGGAAGAGCTCTACCTAAAAGATACTTTGGCCGCTT ACCGGACGGCAGCTGATGCTGCCTCTCGTATACAGGAAGCGTTCAGGGAGCGATCGATGAAGTTACAAGCCAAAGTAGTTGAAAGTTCAAACCCGGAGGC TGAAGCACGGAGCATAGTTGCTGCGATGAAGATTCAACATGCTTTCCGTAACTACGAGTCCAAGAAGAAGATGGCAGCTGTTGCTCAAATCCAGCATAGG TTCAGAACTTGGAAAATGCGGAGAGAGTTCCTCACTCTCCGCCGTCACGCCATTAAAATTCAAGCGGCATTCAGGGGCTTGAGAGTGAGGAAGCATTACA GCAAGATCCTCTGGTCAGTCGGAGTGGTCGAGAAAGCAGTCCTACGGTGGCGTCTCAAGAGAAAAGGCCTCCGCGGGCTTAAAGTGAACGACGCGATCCA AGTAGACGAGCAGCAGCAGACAAGCGACACAGAAGAGGAAGAAGGATTCTTCAAAGCCAGCAGAAAACAGGCGGAGGAGCGGGTGGAGAGAGCCGTTGTA ACAGTTCAAGCTATGTTCCGTTCCAAGAAGGCTCAAGTCGAGTATCAAAGGATGAAATCGGCATATAACCAAGCCTCGGTATGTGTTCAAACACTGAACC ATGACAATGATTTCGCCAACTTGCATTCCCTTCTGTTTTTATTAGGGGTTTGGTTAGATAACTCAATTAACCGGCCAACTTTTGTCAGGTAA
AA sequence Show only first row Show all	>Lus10036455 pacid=23174422 polypeptide=Lus10036455 locus=Lus10036455.g ID=Lus10036455.BGIv1.0 annot-version=v1.0 MALATIWAGSLRLLLLMLLLLRDDELPELPLPPATPLALPAIYHHLKSSVVYCDLDAGKVLEEAKSRWLRPNEIHAILCNPKYFTVFVKPVNLPKSGTIV LFDRKMLRNFRKDGYRWKKKRDGKTVKEAHEHLKVGTEERIHVYYAHGEDNQTFVRRCYWLLDKYVSLTLQSPSVTPLNSNSSSVSNPSTPWLSAEQFDS GDGHAYSIAEKDLTDPGSLTVNHHQLRIHDINTLEWDDLVSSDPNNLITFGDNSSYLNKQNQVALNGAASYHNASLPASNISEGNSPINQAIGPYVNSGT TFYSAPAGTYSQISNLQLNSNTQSIHYQTMGLDSSLDNLITDGLQSEESSTKWNNDAMATSKASVEDHLFEPSISPGDGSSASPAIGPGQYSVEGYSFVI TDVSHAWAFSSETTKSLHLANSTLLCVCGDDCISTEVVQSGVYRCYLPPHSPGLVNLCLSLDGCKPLSQIVSFEYRESAHNGDDVVSKDESSTWERFHLQ TRLAYLLLSTSKTLNLLRSKVSPSNLKEADKFAIRTTNITRSWSYLFALIDENRISLTQAKEDVYEITLKSILQEWLLERVVEGCSKSSEYDAEGQGVIH LCARLGYTWAIYLYSWSGLSLDFRDKHGWTALHWAAYYGREKMVAGLLSAGTKPNLVTDPTAENPGGLTPADVATQTGHEGLAAYLSEKALVSHFNDMSI AGNVCGALQPTEPIIGAENLSEEELYLKDTLAAYRTAADAASRIQEAFRERSMKLQAKVVESSNPEAEARSIVAAMKIQHAFRNYESKKKMAAVAQIQHR FRTWKMRREFLTLRRHAIKIQAAFRGLRVRKHYSKILWSVGVVEKAVLRWRLKRKGLRGLKVNDAIQVDEQQQTSDTEEEEGFFKASRKQAEERVERAVV TVQAMFRSKKAQVEYQRMKSAYNQASVCVQTLNHDNDFANLHSLLFLLGVWLDNSINRPTFVR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G16150	CAMTA		calmodulin binding;transcripti...		Lus10036455 [exp]	0	1
AT1G29400		AML5	MEI2-like protein 5 (.1.2)		Lus10004591 [exp]	1.4	0.8843
AT1G70060		SNL4	SIN3-like 4 (.1)		Lus10013293 [exp]	2.4	0.8618
AT5G22030		UBP8	ubiquitin-specific protease 8 ...		Lus10013599 [exp]	3.5	0.8671
AT4G38600		UPL3, KAK	UBIQUITIN-PROTEIN LIGASE 3, KA...		Lus10019908 [exp]	3.9	0.8484
AT4G00590			N-terminal nucleophile aminohy...		Lus10040935 [exp]	4.5	0.8006
AT5G41370		XPB1, ATXPB1	ARABIDOPSIS HOMOLOG OF XERODER...		Lus10032287 [exp]	5.3	0.8336
AT4G10930			unknown protein		Lus10032402 [exp]	5.3	0.8500
AT1G27180			disease resistance protein (TI...		Lus10018658 [exp]	5.5	0.8075
AT2G39340		AtSAC3A	yeast Sac3 homolog A, SAC3/GAN...		Lus10030305 [exp]	9.2	0.8365
AT3G48860			unknown protein		Lus10043194 [exp]	11.2	0.8224

Compare expression of checked genes

Lus10036455 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.