Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G02080 313 / 1e-110 ASAR1, ATSARA1C, ATSAR2 secretion-associated RAS super family 2 (.1) AT1G56330 308 / 4e-108 ATSAR1B, ATSAR1, SAR1, ATSARA1B ARABIDOPSIS THALIANA SECRETION-ASSOCIATED RAS 1B, secretion-associated RAS 1B (.1) AT3G62560 305 / 2e-107 Ras-related small GTP-binding family protein (.1) AT1G09180 293 / 2e-102 ATSARA1A, ATSAR1 SECRETION-ASSOCIATED RAS 1, secretion-associated RAS super family 1 (.1) AT1G02620 156 / 2e-49 Ras-related small GTP-binding family protein (.1) AT2G24765 68 / 3e-14 ARF3, ARL1, ATARL1 ARF-LIKE 1, ADP-ribosylation factor 3 (.1.2) AT3G49870 61 / 9e-12 ATARLA1C ADP-ribosylation factor-like A1C (.1) AT2G47170 60 / 2e-11 ARF1A1C, ARF1 Ras-related small GTP-binding family protein (.1) AT5G67560 60 / 2e-11 ATARLA1D ADP-ribosylation factor-like A1D (.1) AT3G62290 60 / 3e-11 ATARFA1E ADP-ribosylation factor A1E (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037739 [exp] 316 / 2e-111 AT4G02080 389 / 2e-140 secretion-associated RAS super family 2 (.1) Lus10016874 [exp] 310 / 9e-109 AT4G02080 383 / 7e-138 secretion-associated RAS super family 2 (.1) Lus10010926 [exp] 309 / 1e-108 AT4G02080 385 / 9e-139 secretion-associated RAS super family 2 (.1) Lus10031408 [exp] 309 / 1e-108 AT4G02080 385 / 9e-139 secretion-associated RAS super family 2 (.1) Lus10041127 [exp] 308 / 2e-107 AT4G02080 369 / 1e-131 secretion-associated RAS super family 2 (.1) Lus10014991 [exp] 60 / 4e-11 AT5G52210 320 / 1e-112 GTP-binding protein 1 (.1.2) Lus10031436 [exp] 60 / 4e-11 AT5G14670 368 / 2e-132 ADP-ribosylation factor A1B (.1) Lus10030884 [exp] 59 / 6e-11 AT5G14670 371 / 4e-133 ADP-ribosylation factor A1B (.1) Lus10038871 [exp] 61 / 7e-11 AT5G52210 326 / 3e-113 GTP-binding protein 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G141900 [exp] 312 / 7e-110 AT4G02080 384 / 3e-138 secretion-associated RAS super family 2 (.1) Potri.008G107800 [exp] 309 / 1e-108 AT4G02080 338 / 4e-120 secretion-associated RAS super family 2 (.1) Potri.005G019100 [exp] 306 / 8e-108 AT4G02080 357 / 1e-127 secretion-associated RAS super family 2 (.1) Potri.013G010000 [exp] 303 / 2e-106 AT4G02080 308 / 3e-108 secretion-associated RAS super family 2 (.1) Potri.013G009900 [exp] 302 / 5e-106 AT4G02080 308 / 3e-108 secretion-associated RAS super family 2 (.1) Potri.005G015400 [exp] 296 / 1e-103 AT4G02080 299 / 7e-105 secretion-associated RAS super family 2 (.1) Potri.006G171500 [exp] 67 / 4e-14 AT2G24765 353 / 8e-127 ARF-LIKE 1, ADP-ribosylation factor 3 (.1.2) Potri.018G096077 [exp] 67 / 5e-14 AT2G24765 354 / 8e-127 ARF-LIKE 1, ADP-ribosylation factor 3 (.1.2) Potri.006G267800 [exp] 66 / 1e-13 AT2G24765 333 / 8e-119 ARF-LIKE 1, ADP-ribosylation factor 3 (.1.2) Potri.018G013700 [exp] 66 / 1e-13 AT2G24765 336 / 6e-120 ARF-LIKE 1, ADP-ribosylation factor 3 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00025 [flax] [poplar] Arf ADP-ribosylation factor family
Representative CDS sequence Show only first row Show all	>Lus10036456 pacid=23174351 polypeptide=Lus10036456 locus=Lus10036456.g ID=Lus10036456.BGIv1.0 annot-version=v1.0 ATGTTCCTCTTCGACTGGTTCTACGGAGTTCTGGCATCTCTCGGGCTATGGCAGAAAGAGGCCAAGATCCTCTTCTTAGGCCTTGACAATGCCGGCAAGA CTACCCTCCTCCACATGCTCAAAGACGAGAGACTAGTGCAACATCAGCCTACGCAGCACCCGACGTCGGAGGAGCTGAGTATAGGGAAGATCAAGTTCAA GGCCTTTGATTTAGGCGGCCACCAGATCGCGCGCCGAGTCTGGAAAGACTACTATGCCAAGGTGGATGCAGTGGTCTACCTTGTGGATGCATACGATAAG GAGAGGTTTGCAGAGTCCAAGAAGGAGTTGGACGCACTCCTATCGGACGAATCCTTGGCCAGCGTCCCATTTCTAATTCTCGGAAACAAGATCGATATCC CTTACGCAGCCTCCGAGGACGAGCTCCGGTACCATCTAGGGCTCAGCAATTTCACTACCGGGAAGGGGAGAGTGAATCTTGCGGACTCCAACGTCCGGGC CCTCGAGGTTTTCATGTGCAGCATTGTGCGCAAGATGGGTTACGGCGATGGTTTCAAGTGGCTATCTCAGTACATCAAGTAG
AA sequence Show only first row Show all	>Lus10036456 pacid=23174351 polypeptide=Lus10036456 locus=Lus10036456.g ID=Lus10036456.BGIv1.0 annot-version=v1.0 MFLFDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDK ERFAESKKELDALLSDESLASVPFLILGNKIDIPYAASEDELRYHLGLSNFTTGKGRVNLADSNVRALEVFMCSIVRKMGYGDGFKWLSQYIK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G02080		ASAR1, ATSARA1C...	secretion-associated RAS super...		Lus10036456 [exp]	0	1
AT5G40810			Cytochrome C1 family (.1.2)		Lus10022328 [exp]	1.0	0.8741
AT4G02080		ASAR1, ATSARA1C...	secretion-associated RAS super...		Lus10037739 [exp]	2.2	0.8116
AT1G26690			emp24/gp25L/p24 family/GOLD fa...		Lus10036786 [exp]	5.1	0.8394
AT1G04980		ATPDI10, ATPDIL...	ARABIDOPSIS THALIANA PROTEIN D...		Lus10035360 [exp]	6.3	0.7837
AT5G14670		ATARFA1B	ADP-ribosylation factor A1B (....		Lus10029144 [exp]	10.0	0.8132
AT1G60780		HAP13	HAPLESS 13, Clathrin adaptor c...		Lus10004626 [exp]	10.8	0.7668
AT3G55440		CYTOTPI, ATCTIM...	CYTOSOLIC ISOFORM TRIOSE PHOSP...		Lus10005461 [exp]	17.1	0.8103
AT2G46170			Reticulon family protein (.1.2...		Lus10036405 [exp]	17.5	0.8209
AT5G50850		MAB1	MACCI-BOU, Transketolase famil...		Lus10043191 [exp]	17.7	0.8010
AT5G03490			UDP-Glycosyltransferase superf...		Lus10036837 [exp]	21.4	0.6442

Compare expression of checked genes

Lus10036456 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.