Plant FIBer expression Database

Lus10036461 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G14600 110 / 2e-32 Target SNARE coiled-coil domain protein (.1)
AT1G29060 102 / 2e-29 Target SNARE coiled-coil domain protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10041130
[exp]
158 / 2e-51 AT4G14600 189 / 4e-63 Target SNARE coiled-coil domain protein (.1)
Lus10008723
[exp]
139 / 6e-44 AT4G14600 211 / 6e-72 Target SNARE coiled-coil domain protein (.1)
Lus10020947
[exp]
139 / 8e-44 AT4G14600 209 / 3e-71 Target SNARE coiled-coil domain protein (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.002G102400
[exp]
105 / 2e-30 AT4G14600 163 / 5e-53 Target SNARE coiled-coil domain protein (.1)
Potri.005G159600
[exp]
104 / 5e-30 AT4G14600 194 / 3e-65 Target SNARE coiled-coil domain protein (.1)
PFAM info
Representative CDS sequence
>Lus10036461 pacid=23174438 polypeptide=Lus10036461 locus=Lus10036461.g ID=Lus10036461.BGIv1.0 annot-version=v1.0
ATGGTAGCGAGCTCCAGCCGATCACCTCCCTTCCACGGCGGCGCTGCTCCGTTCCGGTCCAGTGATGGACTCAGTACGAGGCAGGCGGCATGCTCGGACG
AAATACAGCTGCGGATTGATCCGATGAGCTCCGATTTCGACGACGAGATAAGCAGTCTCCGTTCTCAAGTCAGCCAGCTCAGGAATGTGGCTCAGGAGAT
AGAGACGGAAGCAAAATTCCAGAATGATTTTGTAGATCAGTTGGTATGCTATTTGTCAAAGTTCCATCAATTGTTTGTTTCTTCAGCATATGTCTGTCCT
TCCTTTAGGGTTCATGTTGAGTGA
AA sequence
>Lus10036461 pacid=23174438 polypeptide=Lus10036461 locus=Lus10036461.g ID=Lus10036461.BGIv1.0 annot-version=v1.0
MVASSSRSPPFHGGAAPFRSSDGLSTRQAACSDEIQLRIDPMSSDFDDEISSLRSQVSQLRNVAQEIETEAKFQNDFVDQLVCYLSKFHQLFVSSAYVCP
SFRVHVE

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT4G14600 Target SNARE coiled-coil domai... Lus10036461
[exp]
0 1
AT2G28940 Protein kinase superfamily pro... Lus10040804
[exp]
1.7 0.7769
AT1G06340 Plant Tudor-like protein (.1) Lus10009266
[exp]
11.7 0.6974
AT4G02600 MLO1, ATMLO1 MILDEW RESISTANCE LOCUS O 1, S... Lus10001336
[exp]
19.6 0.6609
AT3G02510 Regulator of chromosome conden... Lus10033543
[exp]
20.8 0.6814
AT2G23090 Uncharacterised protein family... Lus10019287
[exp]
30.1 0.6857
Lus10019733
[exp]
30.2 0.6654
AT2G46580 Pyridoxamine 5'-phosphate oxid... Lus10030234
[exp]
31.0 0.6663
AT5G10260 AtRABH1e RAB GTPase homolog H1E (.1) Lus10024046
[exp]
35.7 0.6413
AT3G47870 AS2 ASL29, SCP, LBD... SIDECAR POLLEN, ASYMMETRIC LEA... Lus10033111
[exp]
40.5 0.6730
AT3G47570 Leucine-rich repeat protein ki... Lus10009394
[exp]
48.7 0.6332

Lus10036461 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.